Update #83
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Update | |
| on: | |
| schedule: | |
| - cron: '0 5 * * 1' | |
| push: | |
| branches: [main] | |
| jobs: | |
| run_script_and_update: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| permissions: | |
| contents: write | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| with: | |
| persist-credentials: true | |
| fetch-depth: 0 | |
| clean: true | |
| - name: Run checkupdate | |
| id: bashscript | |
| run: | | |
| bash ./checkupdate.sh | |
| - name: setup miniconda | |
| if: env.should_run_next_step == 'true' | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| auto-activate-base: false | |
| activate-environment: test | |
| auto-update-conda: true | |
| python-version: "3.11" | |
| environment-file: etc/example-environment.yml | |
| - name: Cache Conda env | |
| if: env.should_run_next_step == 'true' | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.CONDA }}/envs | |
| key: | |
| conda-${{ runner.os }}--${{ runner.arch }}--${{ hashFiles('etc/example-environment.yml') }}-${{ env.CACHE_NUMBER }} | |
| env: | |
| CACHE_NUMBER: 0 | |
| id: cache | |
| - name: Update environment | |
| if: steps.cache.outputs.cache-hit != 'true' && env.should_run_next_step == 'true' | |
| run: | |
| mamba env update -n test -f etc/example-environment.yml | |
| - name: Install python dependencies | |
| if: env.should_run_next_step == 'true' | |
| run: | | |
| conda info | |
| echo "========================" | |
| conda list | |
| conda env list | |
| echo "========================" | |
| playwright install chrome chromium | |
| - name: Setup R | |
| if: env.should_run_next_step == 'true' | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: '4.2.3' | |
| use-public-rspm: true | |
| - name: Cache R dependencies | |
| if: env.should_run_next_step == 'true' | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-R-${{ hashFiles('**/DESCRIPTION') }} | |
| restore-keys: | | |
| ${{ runner.os }}-R- | |
| - name: Setup R dependencies | |
| if: env.should_run_next_step == 'true' | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache: true | |
| cache-version: 1 | |
| - name: Run bash scripts | |
| if: env.should_run_next_step == 'true' | |
| run: | | |
| bash ./main.sh |