🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

Rust coder/decoder for Nucleotide Archival Format (NAF) files.

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

Rust coder/decoder for Nucleotide Archive Format (NAF) files.

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

Predict epigenetic age from DNA methylation data

The next version of bwa-mem

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

Linux, Jenkins, AWS, SRE, Prometheus, Docker, Python, Ansible, Git, Kubernetes, Terraform, OpenStack, SQL, NoSQL, Azure, GCP, DNS, Elastic, Network, Virtualization. DevOps Interview Questions

Fast Gene Set Enrichment Analysis

Benchmarking FASTQ compression with 'mature' compression algorithms

A custom diff and merge driver for sqlite

Workflows for the processing of public and in-house spatial and/or single cell/nucleus RNA-seq glioma datasets

R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data

scDIOR: Single cell data IO softwaRe

Visualize and annotate genomic coverage with ggplot2

🎨 Visualisation toolbox for beautiful and publication-ready figures

Neural G0: a quiescent-like state found in neuroepithelial-derived cells and glioma

GLASS consortium

Free monospaced font with programming ligatures

Identification of circRNAs and their function in Prostate cancer

✂️ Easy half-half geoms in ggplot2

Visualizations of distributions and uncertainty

RF model and functions to estimate tumor purity using methylation data

ZStandard Random Access (ZRA) allows random access inside an archive compressed using ZStandard