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59 Open 95 Closed
59 Open 95 Closed
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Issues list

Mask fewer sites, the mask sites include lots of false positives
#384 opened Nov 12, 2024 by corneliusroemer
3
Conda boost-cpp dependancy clash
#379 opened Aug 4, 2024 by jodyphelan
1
NC_045512 shows up in MAT when extracting from a WNV auspice tree
#378 opened Jul 1, 2024 by jcw349
5
does matUtils extract has -M function?
#376 opened May 21, 2024 by liamxg
3
what is the cluster_span meaning?
#375 opened May 20, 2024 by liamxg
1
Several attempts at installation fail
#374 opened Apr 20, 2024 by terrycojones
4
SC2 tree: Branch specific masking for nuc 21941 (S:127) on BA.2.86 branch
#372 opened Mar 25, 2024 by corneliusroemer
Mac OS installation script seems broken
#369 opened Mar 4, 2024 by aofarrel
Duplicate Nodes with Special Characters in Name
#368 opened Mar 4, 2024 by gp201
1
Extracting gene mutations using matUtils extract and generate subsequent tree
#367 opened Feb 28, 2024 by Biophylo2001
1
USher: have been mutations displayed on the branch changed? or is it a bug ?
#366 opened Feb 16, 2024 by FedeGueli
12
matutils extract segfaults with -s, but not -K, if no samples in text file are on tree
#365 opened Feb 14, 2024 by aofarrel
1
Identify amino acid mutation spread in large population
#364 opened Feb 6, 2024 by Biophylo2001
Usher server down: "Very early error"
#363 opened Feb 5, 2024 by corneliusroemer
6
Apple M1 arm64 How to install USHER
#362 opened Jan 8, 2024 by Lijuming33
no response after I upload 1400 sequences.
#361 opened Dec 21, 2023 by liamxg
12
Too many sequences in an output tree
#358 opened Nov 6, 2023 by imdanique
1
Different number of Sequences in Tree and Fasta
#356 opened Oct 26, 2023 by wtporter
2
Unclear why reversion is not indicated in Auspice export
#354 opened Oct 18, 2023 by corneliusroemer
2
Very early error: Couldn't connect to database hgcentral on hgnfs1 as hgcentuser. Too many connections
#353 opened Oct 15, 2023 by corneliusroemer
1
Suggestion to update removal rules to adapt to the current mass recombinant situation
#352 opened Sep 30, 2023 by xz-keg
Error needLargeMem: Out of memory - request size 65568 bytes, errno: 12
#351 opened Sep 18, 2023 by corneliusroemer
13
Issues in XBB.1.9* cluster
#350 opened Sep 1, 2023 by NkRMnZr
ENH: Store imputed nucleotides for each tip
#349 opened Jul 26, 2023 by corneliusroemer
several issues
#348 opened Jul 20, 2023 by shay671
1
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