💊 fixing aQual is nonessential and conflicts with ALN_QUAL_MIN=0

Revert ":pill: fix corner case where alignment has no aQual score" This reverts commit c4effa6.
yanailab · Oct 12, 2018 · 2294a50 · 2294a50
1 parent 1a353cb
commit 2294a50
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/celseq2/count_umi.py b/celseq2/count_umi.py
@@ -63,7 +63,7 @@ def count_umi(sam_fpath, features, stranded='yes',
         except KeyError:
             pass
 
-        if not aln.aQual or aln.aQual < accept_aln_qual_min:
+        if aln.aQual < accept_aln_qual_min:
             aln_cnt["_low_map_qual"] += 1
             continue