Faster subsetting for cohorts (#397) #2007
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| name: CI Additional | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| pull_request: | |
| branches: | |
| - "*" | |
| workflow_dispatch: # allows you to trigger manually | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| detect-ci-trigger: | |
| name: detect ci trigger | |
| runs-on: ubuntu-latest | |
| if: | | |
| github.repository == 'xarray-contrib/flox' | |
| && (github.event_name == 'push' || github.event_name == 'pull_request') | |
| outputs: | |
| triggered: ${{ steps.detect-trigger.outputs.trigger-found }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 2 | |
| - uses: xarray-contrib/[email protected] | |
| id: detect-trigger | |
| with: | |
| keyword: "[skip-ci]" | |
| doctest: | |
| name: Doctests | |
| runs-on: "ubuntu-latest" | |
| needs: detect-ci-trigger | |
| if: needs.detect-ci-trigger.outputs.triggered == 'false' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| CONDA_ENV_FILE: ci/environment.yml | |
| PYTHON_VERSION: "3.12" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # Fetch all history for all branches and tags. | |
| - name: set environment variables | |
| run: | | |
| echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV | |
| - name: Setup micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: ${{env.CONDA_ENV_FILE}} | |
| environment-name: flox-tests | |
| init-shell: bash | |
| cache-environment: true | |
| cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
| create-args: | | |
| python=${{ env.PYTHON_VERSION }} | |
| - name: Install flox | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Version info | |
| run: | | |
| conda info -a | |
| conda list | |
| - name: Run doctests | |
| run: | | |
| python -m pytest --doctest-modules \ | |
| flox/aggregations.py flox/core.py flox/xarray.py \ | |
| --ignore flox/tests \ | |
| --cov=./ --cov-report=xml | |
| - name: Upload code coverage to Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| env_vars: RUNNER_OS | |
| name: codecov-umbrella | |
| fail_ci_if_error: false | |
| mypy: | |
| name: Mypy | |
| runs-on: "ubuntu-latest" | |
| needs: detect-ci-trigger | |
| if: needs.detect-ci-trigger.outputs.triggered == 'false' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| CONDA_ENV_FILE: ci/environment.yml | |
| PYTHON_VERSION: "3.12" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # Fetch all history for all branches and tags. | |
| - name: set environment variables | |
| run: | | |
| echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV | |
| - name: Setup micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: ${{env.CONDA_ENV_FILE}} | |
| environment-name: flox-tests | |
| init-shell: bash | |
| cache-environment: true | |
| cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
| create-args: | | |
| python=${{ env.PYTHON_VERSION }} | |
| - name: Install flox | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Version info | |
| run: | | |
| conda info -a | |
| conda list | |
| - name: Install mypy | |
| run: | | |
| python -m pip install mypy | |
| - name: Run mypy | |
| run: | | |
| mkdir .mypy_cache | |
| python -m mypy --install-types --non-interactive --cache-dir=.mypy_cache/ --cobertura-xml-report mypy_report | |
| - name: Upload mypy coverage to Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| file: mypy_report/cobertura.xml | |
| flags: mypy | |
| env_vars: PYTHON_VERSION | |
| name: codecov-umbrella | |
| fail_ci_if_error: false |