Update dependencies in setup.py and dev.yml (#174)

* Update dependencies in `setup.py` and `dev.yml`
- Reorder dependencies alphabetically by section
- Update `dev.yml` pins to the latest versions
- Update `.pre-commit-config.yaml` to latest versions
- Add Python 3.9 to `setup.py` classifiers

* Update documentation for installing xcdat through conda-forge

.pre-commit-config.yaml

@@ -11,19 +11,19 @@ repos:
           - id: check-yaml
 
     - repo: https://github.com/psf/black
-      rev: 21.9b0
+      rev: 21.11b1
       hooks:
           - id: black
 
     - repo: https://github.com/timothycrosley/isort
-      rev: 5.9.3
+      rev: 5.10.1
       hooks:
           - id: isort
 
     # Need to use flake8 GitHub mirror due to CentOS git issue with GitLab
     # https://github.com/pre-commit/pre-commit/issues/1206
     - repo: https://github.com/pycqa/flake8
-      rev: 3.9.2
+      rev: 4.0.1
       hooks:
           - id: flake8
             args: ["--config=setup.cfg"]

conda-env/dev.yml

@@ -7,34 +7,36 @@ dependencies:
     # Base
     # ==================
     - python=3.9.7
-    - pip=21.2.4
-    - typing_extensions=3.10.0.0 # Required to make use of Python >=3.8 backported types
-    - netcdf4=1.5.7
-    - xarray=0.19.0
+    - pip=21.3.1
     - cf_xarray=0.6.1
-    - dask=2021.9.1
+    - dask=2021.11.2
+    - netcdf4=1.5.8
+    - numpy=1.21.4
+    - pandas=1.3.4
+    - typing_extensions=4.0.1 # Required to make use of Python >=3.8 backported types
+    - xarray=0.20.1
     # Quality Assurance
     # ==================
     # If versions are updated, also update 'rev' in `.pre-commit.config.yaml`
-    - black=21.9b0
-    - isort=5.9.3
-    - flake8=3.9.2
-    - flake8-isort=4.0.0
+    - black=21.11b1
+    - flake8=4.0.1
+    - flake8-isort=4.1.1
+    - isort=5.10.1
     - mypy=0.910
-    - pre-commit=2.15.0
+    - pre-commit=2.16.0
     # Testing
     # ==================
     - pytest=6.2.5
     - pytest-cov=3.0.0
     # Developer Tools
-    - jupyterlab=3.1.17
+    - jupyterlab=3.2.4
     # Documentation
     # ==================
-    - sphinx=4.2.0
+    - sphinx=4.3.1
     - sphinxcontrib-napoleon=0.7
-    - sphinx-copybutton=0.4.0
-    - sphinx-book-theme=0.1.5
     - sphinx-autosummary-accessors=0.2.1
+    - sphinx-book-theme=0.1.7
+    - sphinx-copybutton=0.4.0
     - pip:
-          - tbump==6.4.1
+          - tbump==6.6.0
 prefix: /opt/miniconda3/envs/xcdat_dev

docs/getting_started.rst

@@ -16,7 +16,7 @@ To install XCDAT using Conda, run:
 
 .. code-block:: console
 
-    $ conda install xcdat
+    $ conda install -c conda-forge xcdat
 
 This is the preferred method to install XCDAT, as it will always install the most recent stable release.
 

setup.py

@@ -16,10 +16,11 @@
 install_requires: List[str] = [
     "cf_xarray",
     "dask",
+    "netcdf4",
     "numpy",
     "pandas",
-    "xarray",
     "typing_extensions",
+    "xarray",
 ]
 test_requires = ["pytest>=3"]
 
@@ -36,6 +37,7 @@
         "Programming Language :: Python :: 3.6",
         "Programming Language :: Python :: 3.7",
         "Programming Language :: Python :: 3.8",
+        "Programming Language :: Python :: 3.9",
     ],
     description="Xarray Extended with Climate Data Analysis Tools",
     install_requires=install_requires,