Merge pull request StatCan#126 from StatCan/pin-all-versions

fix: pin versions for cpu and gpu packages

base-notebook/gpu/Dockerfile

@@ -205,33 +205,33 @@ USER $NB_UID
 
 # Install Python 3 packages
 RUN conda install --quiet --yes \
-    'beautifulsoup4=4.8.*' \
+    'beautifulsoup4=4.8.2' \
     'conda-forge::blas=*=openblas' \
-    'bokeh=1.4.*' \
-    'cloudpickle=1.3.*' \
-    'cython=0.29.*' \
-    'dask=2.11.*' \
-    'dill=0.3.*' \
-    'h5py=2.10.*' \
-    'hdf5=1.10.*' \
-    'ipywidgets=7.5.*' \
-    'ipympl=0.5.*'\
-    'matplotlib-base=3.1.*' \
-    'numba=0.48.*' \
-    'numexpr=2.7.*' \
-    'pandas=1.0.*' \
-    'patsy=0.5.*' \
-    'protobuf=3.11.*' \
-    'scikit-image=0.16.*' \
-    'scikit-learn=0.22.*' \
-    'scipy=1.4.*' \
-    'seaborn=0.10.*' \
-    'sqlalchemy=1.3.*' \
-    'statsmodels=0.11.*' \
-    'sympy=1.5.*' \
-    'vincent=0.4.*' \
-    'widgetsnbextension=3.5.*'\
-    'xlrd' \
+    'bokeh=1.4.0' \
+    'cloudpickle=1.3.0' \
+    'cython=0.29.21' \
+    'dask=2.11.0' \
+    'dill=0.3.2' \
+    'h5py=2.10.0' \
+    'hdf5=1.10.6' \
+    'ipywidgets=7.5.1' \
+    'ipympl=0.5.8'\
+    'matplotlib-base=3.1.3' \
+    'numba=0.48.0' \
+    'numexpr=2.7.1' \
+    'pandas=1.0.5' \
+    'patsy=0.5.1' \
+    'protobuf=3.11.4' \
+    'scikit-image=0.16.2' \
+    'scikit-learn=0.22.2.post1' \
+    'scipy=1.4.1' \
+    'seaborn=0.10.1' \
+    'sqlalchemy=1.3.19' \
+    'statsmodels=0.11.1' \
+    'sympy=1.5.1' \
+    'vincent=0.4.4' \
+    'widgetsnbextension=3.5.1'\
+    'xlrd=1.2.0' \
     && \
     conda clean --all -f -y && \
     # Activate ipywidgets extension in the environment that runs the notebook server
@@ -317,24 +317,24 @@ USER $NB_UID
 # R packages including IRKernel which gets installed globally.
 RUN conda install --quiet --yes \
     'r-base=3.6.2' \
-    'r-caret=6.0*' \
-    'r-crayon=1.3*' \
-    'r-devtools=2.2*' \
-    'r-forecast=8.10*' \
-    'r-hexbin=1.28*' \
-    'r-htmltools=0.4*' \
-    'r-htmlwidgets=1.5*' \
-    'r-irkernel=1.1*' \
-    'r-nycflights13=1.0*' \
-    'r-plyr=1.8*' \
-    'r-randomforest=4.6*' \
-    'r-rcurl=1.98*' \
-    'r-reshape2=1.4*' \
-    'r-rmarkdown=2.1*' \
-    'r-rsqlite=2.1*' \
-    'r-shiny=1.3*' \
-    'r-tidyverse=1.3*' \
-    'rpy2=3.1*' \
+    'r-caret=6.0_86' \
+    'r-crayon=1.3.4' \
+    'r-devtools=2.2.2' \
+    'r-forecast=8.10' \
+    'r-hexbin=1.28.1' \
+    'r-htmltools=0.4.0' \
+    'r-htmlwidgets=1.5.1' \
+    'r-irkernel=1.1.1' \
+    'r-nycflights13=1.0.1' \
+    'r-plyr=1.8.6' \
+    'r-randomforest=4.6_14' \
+    'r-rcurl=1.98_1.2' \
+    'r-reshape2=1.4.4' \
+    'r-rmarkdown=2.1' \
+    'r-rsqlite=2.1.5' \
+    'r-shiny=1.3.2' \
+    'r-tidyverse=1.3.0' \
+    'rpy2=3.1.0' \
     && \
     conda clean --all -f -y && \
     fix-permissions $CONDA_DIR && \

geomatics-notebook/cpu/Dockerfile

@@ -2,34 +2,34 @@ FROM k8scc01covidacr.azurecr.io/minimal-notebook-cpu:master
 USER root
 
 RUN conda install --quiet --yes \
-      'fiona' \
-      'gdal' \
-      'geopandas' \
-      'rasterio' \
-      'r-classInt' \
-      'r-deldir' \
-      'r-geoR' \
-      'r-geosphere' \
-      'r-gstat' \
-      'r-hdf5r' \
-      'r-lidR' \
-      'r-mapdata' \
-      'r-maptools' \
-      'r-mapview' \
-      'r-ncdf4' \
-      'r-proj4' \
-      'r-RandomFields' \
-      'r-raster' \
-      'r-RColorBrewer' \
-      'r-rgdal' \
-      'r-rgeos' \
-      'r-rlas' \
-      'r-RNetCDF' \
-      'r-sf' \
-      'r-sp' \
-      'r-spacetime' \
-      'r-spatstat' \
-      'r-spdep' \
+      'fiona==1.8.9.post2' \
+      'gdal==2.4.2' \
+      'geopandas==0.8.1' \
+      'rasterio==1.0.28' \
+      'r-classInt==0.4_3' \
+      'r-deldir==0.1_29' \
+      'r-geoR==1.8_1' \
+      'r-geosphere==1.5_10' \
+      'r-gstat==2.0_6' \
+      'r-hdf5r==1.3.2' \
+      'r-lidR==3.0.3' \
+      'r-mapdata==2.3.0' \
+      'r-maptools==1.0_2' \
+      'r-mapview==2.9.0' \
+      'r-ncdf4==1.16.1' \
+      'r-proj4==1.0_8' \
+      'r-RandomFields==3.3.8' \
+      'r-raster==3.3_13' \
+      'r-RColorBrewer==1.1_2' \
+      'r-rgdal==1.4_4' \
+      'r-rgeos==0.5_2' \
+      'r-rlas==1.3.6' \
+      'r-RNetCDF==2.0_3' \
+      'r-sf==0.7_6' \
+      'r-sp==1.4_2' \
+      'r-spacetime==1.2_3' \
+      'r-spatstat==1.64_1' \
+      'r-spdep==1.1_5' \
     && \
     conda clean --all -f -y && \
     fix-permissions $CONDA_DIR && \

machine-learning-notebook/cpu/Dockerfile

@@ -5,7 +5,7 @@ USER root
 RUN conda config --set channel_priority false && \
     conda install --quiet --yes \
       'tensorflow=2.1*' \
-      'keras' \
+      'keras==2.3.1' \
     && \
     conda clean --all -f -y && \
     fix-permissions $CONDA_DIR && \
@@ -14,26 +14,26 @@ RUN conda config --set channel_priority false && \
 # Install PyTorch
 RUN conda config --set channel_priority false && \
     conda install --quiet --yes \
-      'cmake' \
-      'cffi' \
-      'mkl' \
-      'mkl-include' \
-      'pyyaml' \
-      'setuptools' \
-      'typing' \
+      'cmake==3.14.0' \
+      'cffi==1.14.1' \
+      'mkl==2020.2' \
+      'mkl-include==2020.2' \
+      'pyyaml==5.3.1' \
+      'setuptools==49.6.0' \
+      'typing==3.7.4.3' \
     && \
     conda clean --all -f -y && \
     fix-permissions $CONDA_DIR && \
     fix-permissions /home/$NB_USER
 
 RUN conda config --set channel_priority false && \
     conda install --quiet --yes \
-     'pytorch' \
-     'torchvision' \
+     'pytorch==1.3.1' \
+     'torchvision==0.4.2' \
     && \
     conda install --quiet --yes \
     -c pytorch \
-      'torchtext' \
+      'torchtext==0.6.0' \
     && \
     conda clean --all -f -y && \
     fix-permissions $CONDA_DIR && \

machine-learning-notebook/gpu/Dockerfile

@@ -5,7 +5,7 @@ USER root
 RUN conda config --set channel_priority false && \
     conda install --quiet --yes \
       'tensorflow=2.1*' \
-      'keras' \
+      'keras=2.3.1' \
     && \
     conda clean --all -f -y && \
     fix-permissions $CONDA_DIR && \
@@ -14,22 +14,22 @@ RUN conda config --set channel_priority false && \
 # Install PyTorch
 RUN conda config --set channel_priority false && \
     conda install --quiet --yes \
-      'cmake' \
-      'cffi' \
-      'mkl' \
-      'mkl-include' \
-      'pyyaml' \
-      'setuptools' \
-      'typing' \
+      'cmake==3.17.0' \
+      'cffi==1.14.3' \
+      'mkl==2020.2' \
+      'mkl-include==2020.2' \
+      'pyyaml==5.3.1' \
+      'setuptools==49.6.0' \
+      'typing==3.7.4.3' \
     && \
     conda clean --all -f -y && \
     fix-permissions $CONDA_DIR && \
     fix-permissions /home/$NB_USER
 
 RUN conda config --set channel_priority false && \
     conda install --quiet --yes \
-     'pytorch' \
-     'torchvision' \
+     'pytorch==1.3.1' \
+     'torchvision==0.4.2' \
     && \
     conda clean --all -f -y && \
     fix-permissions $CONDA_DIR && \
@@ -38,7 +38,7 @@ RUN conda config --set channel_priority false && \
 # Install XGBoost
 RUN conda config --set channel_priority false && \
     conda install --quiet --yes \
-      'xgboost' \
+      'xgboost==1.2.0' \
     && \
     conda clean --all -f -y && \
     fix-permissions $CONDA_DIR && \

minimal-notebook/cpu/Dockerfile

@@ -51,41 +51,41 @@ RUN pip install --quiet \
     && \
     conda install --quiet --yes \
     -c conda-forge \
-      'ipywidgets' \
-      'ipympl' \
-      'jupyter_contrib_nbextensions' \
-      'jupyterlab-dash' \
+      'ipywidgets==7.5.1' \
+      'ipympl==0.5.8' \
+      'jupyter_contrib_nbextensions==0.5.1' \
+      'jupyterlab-dash==0.1.0a3' \
       'jupyterlab-git==0.20.0' \
-      'xeus-python' \
-      'nodejs' \
-      'python-language-server' \
+      'xeus-python==0.8.4' \
+      'nodejs==13.13.0' \
+      'python-language-server==0.31.10' \
     && \
     conda install --quiet --yes \
-      'pyarrow' \
-      'r-dplyr' \
-      'r-tidyr' \
-      'r-jsonlite' \
-      'r-ggplot2' \
-      'r-rstan' \
+      'pyarrow==0.17.1' \
+      'r-dplyr==1.0.0' \
+      'r-tidyr==1.1.2' \
+      'r-jsonlite==1.7.1' \
+      'r-ggplot2==3.3.2' \
+      'r-rstan==2.21.2' \
     && \
     conda clean --all -f -y && \
     jupyter nbextension enable codefolding/main --sys-prefix && \
     jupyter labextension install --no-build \
-      '@ijmbarr/jupyterlab_spellchecker' \
-      '@jupyter-widgets/jupyterlab-manager'  \
-      '@hadim/jupyter-archive' \
-      '@krassowski/jupyterlab-lsp' \
-      '@lckr/jupyterlab_variableinspector' \
-      '@jupyterlab/debugger' \
-      '@jupyterlab/github' \
+      '@ijmbarr/jupyterlab_spellchecker@0.1.6' \
+      '@jupyter-widgets/jupyterlab-manager@2.0.0'  \
+      '@hadim/jupyter-archive@0.7.0' \
+      '@krassowski/jupyterlab-lsp@2.0.6' \
+      '@lckr/jupyterlab_variableinspector@0.5.1' \
+      '@jupyterlab/debugger@0.3.2' \
+      '@jupyterlab/github@2.0.0' \
       '@jupyterlab/[email protected]' \
-      '@jupyterlab/toc' \
-      'jupyter-matplotlib' \
-      'jupyterlab-execute-time' \
-      'jupyterlab-plotly' \
-      'jupyterlab-theme-solarized-dark' \
-      'jupyterlab-spreadsheet' \
-      'nbdime-jupyterlab' \
+      '@jupyterlab/toc@4.0.0' \
+      'jupyter-matplotlib@0.7.4' \
+      'jupyterlab-execute-time@1.0.0' \
+      'jupyterlab-plotly@4.10.0' \
+      'jupyterlab-theme-solarized-dark@1.0.2' \
+      'jupyterlab-spreadsheet@0.3.2' \
+      'nbdime-jupyterlab@2.0.0' \
     && \
     jupyter lab build && \
     jupyter lab clean && \