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clarify two immuno inputs #167

Merged
merged 1 commit into from
Dec 26, 2024
Merged

clarify two immuno inputs #167

merged 1 commit into from
Dec 26, 2024

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malachig
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Pass through iedb_retries variable to pvacseq and improve documentation of hla_source_mode.

The input variable iedb_retries could be used in tools/pvacseq.wdl and tools/pvacfuse.wdl. However, in immuno.wdl, it was only getting passed through to pvacfuse. Fixing that.

The input variable hla_source_mode was being described as an input to pvacseq, which it is not. Clarifying that.

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Testing this PR using pici-5 data as an example

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This testing was successful.

@malachig malachig merged commit 21b3b97 into main Dec 26, 2024
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