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Add Snakemake workflow #24

Merged
merged 5 commits into from
Jun 21, 2024
Merged

Add Snakemake workflow #24

merged 5 commits into from
Jun 21, 2024

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alexhambley
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Resolves #18 and #23
PR contains:

  • Updated Dockerfile and python versioning
  • Intermediate script check_outputs.py to facilitate dependencies for Snakemake
  • Snakemake workflow

Update the Dockerfile to work with Snakemake.
See #18
Update versioning to match Dockerfile
See #18
Addresses #23
Intermediate script added to assist Snakemake with expected outputs.
- Added Snakefile
- Added workflow_version to docstring in absolutize.py
- Addresses #18
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@OliverWoolland OliverWoolland left a comment

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All looking good to me

@OliverWoolland OliverWoolland merged commit e4433cc into develop Jun 21, 2024
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Create workflow to automate graph generation
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