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Add coverage vs ANI output to pyani plot #175

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widdowquinn opened this issue Jan 16, 2020 · 0 comments · Fixed by #319
Closed

Add coverage vs ANI output to pyani plot #175

widdowquinn opened this issue Jan 16, 2020 · 0 comments · Fixed by #319
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enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something visualisation issues relating to plot outputs
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@widdowquinn
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Summary:

Add a scatterplot of coverage vs ANI to the pyani plot output

Expected Output:

This scatterplot will enable at a glance interpretation of results in an analysis set. It also makes output visually comparable to the data in Barco et al. (2020).

We could provide a choice of several colouring/labelling options.

  • most basic would be a plain scatterplot showing coverage vs ANI
  • it would be useful to have an indication of class (as given in classes.txt or genus/species label (inferred from labels.txt, perhaps) indicated as colour or symbol.
  • I would very much like to have a plot where the result of pyani classify is shown on the plot as symbol/colour differences - possibly specifying an ANI level, and indicating which cliques are 'active' at that level.
@widdowquinn widdowquinn added the enhancement something we'd like pyani to do that it doesn't already label Jan 16, 2020
@widdowquinn widdowquinn self-assigned this Jan 16, 2020
@widdowquinn widdowquinn modified the milestones: 0.3.0, 0.3.1 May 28, 2020
@widdowquinn widdowquinn added the interface issues related to how the user tells pyani to do something label May 29, 2020
@baileythegreen baileythegreen added the visualisation issues relating to plot outputs label Jul 22, 2021
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enhancement something we'd like pyani to do that it doesn't already interface issues related to how the user tells pyani to do something visualisation issues relating to plot outputs
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