feat: remove readers (#165)

wheretrue · Jul 29, 2024 · 7efabf0 · 7efabf0
1 parent 8d4f8f1
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diff --git a/python/biobear/__init__.py b/python/biobear/__init__.py
@@ -14,15 +14,6 @@
 
 """Main biobear package."""
 
-from biobear.fasta_reader import FastaReader
-from biobear.fastq_reader import FastqReader
-from biobear.vcf_reader import VCFReader, VCFIndexedReader
-from biobear.bam_reader import BamReader, BamIndexedReader
-from biobear.gtf_reader import GTFReader
-from biobear.gff_reader import GFFReader
-from biobear.mzml_reader import MzMLReader
-from biobear.genbank_reader import GenbankReader
-from biobear.bcf_reader import BCFReader, BCFIndexedReader
 from biobear import compression
 from biobear.compression import Compression
 
@@ -52,18 +43,6 @@
 __version__ = "0.22.7"
 
 __all__ = [
-    "FastaReader",
-    "FastqReader",
-    "VCFReader",
-    "VCFIndexedReader",
-    "BamReader",
-    "BamIndexedReader",
-    "BCFReader",
-    "BCFIndexedReader",
-    "GFFReader",
-    "GTFReader",
-    "GenbankReader",
-    "MzMLReader",
     "compression",
     "Compression",
     "FileCompressionType",

diff --git a/python/biobear/bam_reader.py b/python/biobear/bam_reader.py
diff --git a/python/biobear/bcf_reader.py b/python/biobear/bcf_reader.py
diff --git a/python/biobear/fasta_reader.py b/python/biobear/fasta_reader.py
diff --git a/python/biobear/fastq_reader.py b/python/biobear/fastq_reader.py
diff --git a/python/biobear/genbank_reader.py b/python/biobear/genbank_reader.py