build: remove deprecated

wheretrue · Jan 25, 2024 · 01a65ab · 01a65ab
1 parent 04c9f04
commit 01a65ab
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diff --git a/python/biobear/bam_reader.py b/python/biobear/bam_reader.py
@@ -19,11 +19,9 @@
 import pyarrow as pa
 
 from biobear.reader import Reader
-from biobear.deprecated import deprecated
 from .biobear import _BamIndexedReader, _ExonReader
 
 
-@deprecated
 class BamReader(Reader):
     """A BAM File Reader."""
 

diff --git a/python/biobear/bcf_reader.py b/python/biobear/bcf_reader.py
@@ -21,12 +21,10 @@
 
 
 from biobear.reader import Reader
-from biobear.deprecated import deprecated
 
 from .biobear import _ExonReader, _BCFIndexedReader
 
 
-@deprecated
 class BCFReader(Reader):
     """A BCF File Reader.
 
@@ -48,7 +46,6 @@ def inner(self):
         return self._bcf_reader
 
 
-@deprecated
 class BCFIndexedReader(Reader):
     """An Indexed BCF File Reader.
 

diff --git a/python/biobear/deprecated.py b/python/biobear/deprecated.py
diff --git a/python/biobear/fasta_reader.py b/python/biobear/fasta_reader.py
@@ -17,12 +17,10 @@
 
 from biobear.reader import Reader
 from biobear.compression import Compression
-from biobear.deprecated import deprecated
 
 from .biobear import _ExonReader
 
 
-@deprecated
 class FastaReader(Reader):
     """FASTA file reader."""
 

diff --git a/python/biobear/fastq_reader.py b/python/biobear/fastq_reader.py
@@ -17,12 +17,10 @@
 
 from biobear.reader import Reader
 from biobear.compression import Compression
-from biobear.deprecated import deprecated
 
 from .biobear import _ExonReader
 
 
-@deprecated
 class FastqReader(Reader):
     """FASTQ file reader."""
 

diff --git a/python/biobear/genbank_reader.py b/python/biobear/genbank_reader.py
@@ -3,12 +3,10 @@
 
 from biobear.reader import Reader
 from biobear.compression import Compression
-from biobear.deprecated import deprecated
 
 from .biobear import _ExonReader
 
 
-@deprecated
 class GenbankReader(Reader):
     """Genbank file reader."""
 

diff --git a/python/biobear/gff_reader.py b/python/biobear/gff_reader.py
@@ -7,12 +7,10 @@
 
 from biobear.compression import Compression
 from biobear.reader import Reader
-from biobear.deprecated import deprecated
 
 from .biobear import _ExonReader
 
 
-@deprecated
 class GFFReader(Reader):
     """A GFF File Reader."""
 

diff --git a/python/biobear/gtf_reader.py b/python/biobear/gtf_reader.py
@@ -7,12 +7,10 @@
 
 from biobear.compression import Compression
 from biobear.reader import Reader
-from biobear.deprecated import deprecated
 
 from .biobear import _ExonReader
 
 
-@deprecated
 class GTFReader(Reader):
     """A GTF File Reader."""
 

diff --git a/python/biobear/mzml_reader.py b/python/biobear/mzml_reader.py
@@ -4,12 +4,10 @@
 
 from biobear.compression import Compression
 from biobear.reader import Reader
-from biobear.deprecated import deprecated
 
 from .biobear import _ExonReader
 
 
-@deprecated
 class MzMLReader(Reader):
     """A MzML File Reader."""
 

diff --git a/python/biobear/vcf_reader.py b/python/biobear/vcf_reader.py
@@ -19,12 +19,10 @@
 import pyarrow as pa
 
 from biobear.reader import Reader
-from biobear.deprecated import deprecated
 
 from .biobear import _ExonReader, _VCFIndexedReader
 
 
-@deprecated
 class VCFReader(Reader):
     """A VCF File Reader.
 
@@ -46,7 +44,6 @@ def inner(self):
         return self._vcf_reader
 
 
-@deprecated
 class VCFIndexedReader(Reader):
     """An Indexed VCF File Reader.