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requirement and version update
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alisandra committed Jul 16, 2023
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206 changes: 68 additions & 138 deletions requirements.exact_pip_freeze.txt
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absl-py==1.3.0
anyio==3.6.2
absl-py==1.4.0
appdirs==1.4.4
argon2-cffi==21.3.0
argon2-cffi-bindings==21.2.0
astor==0.8.1
asttokens==2.1.0
astunparse==1.6.3
attrs==22.1.0
backcall==0.2.0
beautifulsoup4==4.11.1
bleach==5.0.1
cachetools==5.2.0
certifi==2022.9.24
cffi==1.15.1
charset-normalizer==2.1.1
cloudpickle==2.2.0
colorama==0.4.5
cachetools==5.3.1
certifi==2023.5.7
charset-normalizer==3.2.0
cloudpickle==2.2.1
colorama==0.4.6
contextlib2==21.6.0
contourpy==1.0.5
contourpy==1.1.0
cycler==0.11.0
debugpy==1.6.3
decorator==5.1.1
defusedxml==0.7.1
Cython==0.29.36
dill==0.3.6
dnspython==2.2.1
dustdas==0.1
entrypoints==0.4
executing==1.2.0
fastjsonschema==2.16.2
filelock==3.8.0
flatbuffers==22.9.24
fonttools==4.38.0
future==0.18.2
exceptiongroup==1.1.2
filelock==3.11.0
flatbuffers==23.5.26
fonttools==4.41.0
gast==0.4.0
-e [email protected]:weberlab-hhu/GeenuFF.git@c66c0ab9389cff60cbc4df74dce8c929a735175a#egg=geenuff
google-auth==2.13.0
google-auth-oauthlib==0.4.6
geenuff==0.3.0
google-auth==2.22.0
google-auth-oauthlib==1.0.0
google-pasta==0.2.0
grpcio==1.50.0
h5py==3.7.0
-e [email protected]:weberlab-hhu/Helixer.git@dd8b383cd4b8251498fded0279257cdc5f12aad5#egg=helixer
HTSeq==2.0.2
hyperopt==0.1.2
grpcio==1.56.0
h5py==3.9.0
-e git+https://github.com/weberlab-hhu/Helixer.git@fbd1a6737eb24e007db0e753e709306f60d66b68#egg=helixer
HTSeq==2.0.3
idna==3.4
importlib-metadata==5.0.0
importlib-resources==5.10.0
iniconfig==1.1.1
importlib-metadata==6.8.0
importlib-resources==6.0.0
iniconfig==2.0.0
intervaltree==3.1.0
ipykernel==6.17.0
ipython==8.6.0
ipython-genutils==0.2.0
ipywidgets==8.0.2
jedi==0.18.1
Jinja2==3.1.2
joblib==1.2.0
json-tricks==3.15.5
jsonschema==4.17.0
jupyter==1.0.0
jupyter-client==7.4.4
jupyter-console==6.4.4
jupyter-core==4.11.2
jupyter-server==1.21.0
jupyterlab-pygments==0.2.2
jupyterlab-widgets==3.0.3
keras==2.10.0
joblib==1.3.1
json-tricks==3.17.1
keras==2.13.1
keras-layer-normalization==0.16.0
Keras-Preprocessing==1.1.2
kiwisolver==1.4.4
libclang==14.0.6
Markdown==3.4.1
MarkupSafe==2.1.1
matplotlib==3.6.0
matplotlib-inline==0.1.6
memory-profiler==0.60.0
mistune==2.0.4
libclang==16.0.6
Markdown==3.4.3
MarkupSafe==2.1.3
matplotlib==3.7.2
multiprocess==0.70.14
nbclassic==0.4.8
nbclient==0.7.0
nbconvert==7.2.3
nbformat==5.7.0
nest-asyncio==1.5.6
networkx==2.8.7
nni==2.9
notebook==6.5.2
notebook-shim==0.2.2
numcodecs==0.10.2
numpy==1.23.4
nni==2.10.1
numcodecs==0.11.0
numpy==1.24.4
oauthlib==3.2.2
opt-einsum==3.3.0
packaging==21.3
pandas==1.5.1
pandocfilters==1.5.0
parso==0.8.3
pexpect==4.8.0
pickleshare==0.7.5
Pillow==9.2.0
pkgutil-resolve-name==1.3.10
pluggy==1.0.0
prettytable==3.4.1
prometheus-client==0.15.0
prompt-toolkit==3.0.32
protobuf==3.19.6
psutil==5.9.3
ptyprocess==0.7.0
pure-eval==0.2.2
py==1.11.0
pyasn1==0.4.8
pyasn1-modules==0.2.8
pycparser==2.21
Pygments==2.13.0
pymongo==4.3.2
packaging==23.1
pandas==2.0.3
Pillow==10.0.0
pluggy==1.2.0
prettytable==3.8.0
protobuf==4.23.4
psutil==5.9.5
pyasn1==0.5.0
pyasn1-modules==0.3.0
pyparsing==3.0.9
pyrsistent==0.19.2
pysam==0.19.1
pytest==7.1.3
pysam==0.21.0
pytest==7.4.0
python-dateutil==2.8.2
PythonWebHDFS==0.2.3
pytz==2022.5
pytz==2023.3
PyYAML==6.0
pyzmq==24.0.1
qtconsole==5.4.0
QtPy==2.2.1
requests==2.28.1
requests==2.31.0
requests-oauthlib==1.3.1
responses==0.22.0
responses==0.23.1
rsa==4.9
schema==0.7.5
scikit-learn==1.1.2
scipy==1.9.3
seaborn==0.12.1
Send2Trash==1.8.0
simplejson==3.17.6
scikit-learn==1.3.0
scipy==1.10.1
seaborn==0.12.2
simplejson==3.19.1
six==1.16.0
sniffio==1.3.0
sortedcontainers==2.4.0
soupsieve==2.3.2.post1
SQLAlchemy==1.3.22
stack-data==0.6.0
tensorboard==2.10.1
tensorboard-data-server==0.6.1
tensorboard-plugin-wit==1.8.1
tensorflow==2.10.0
tensorflow-addons==0.18.0
tensorflow-estimator==2.10.0
tensorflow-io-gcs-filesystem==0.27.0
termcolor==2.0.1
terminado==0.17.0
tensorboard==2.13.0
tensorboard-data-server==0.7.1
tensorflow==2.13.0
tensorflow-addons==0.21.0
tensorflow-estimator==2.13.0
tensorflow-io-gcs-filesystem==0.32.0
termcolor==2.3.0
terminaltables==3.1.10
threadpoolctl==3.1.0
tinycss2==1.2.1
toml==0.10.2
threadpoolctl==3.2.0
tomli==2.0.1
tornado==6.2
tqdm==4.64.1
traitlets==5.5.0
tqdm==4.65.0
typeguard==2.13.3
types-toml==0.10.8
typing-extensions==4.4.0
urllib3==1.26.12
wcwidth==0.2.5
webencodings==0.5.1
websocket-client==1.4.2
websockets==10.3
Werkzeug==2.2.2
widgetsnbextension==4.0.3
wrapt==1.14.1
zipp==3.10.0
types-PyYAML==6.0.12.10
typing-extensions==4.5.0
tzdata==2023.3
urllib3==2.0.3
wcwidth==0.2.6
websockets==11.0.3
Werkzeug==2.3.6
wrapt==1.15.0
zipp==3.16.2
2 changes: 1 addition & 1 deletion setup.py
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setup(
name='helixer',
version='0.3.1',
version='0.3.2',
description='Deep Learning fun on gene structure data',
packages=['helixer', 'helixer.core', 'helixer.prediction', 'helixer.evaluation', 'helixer.tests', 'helixer.export'],
package_data={'helixer': ['testdata/*.fa', 'testdata/*.gff']},
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