Releases: wan-lab-vanderbilt/STOPGAP
STOPGAP 0.7.4
STOPGAP is a subtomogram averaging workflow written in MATLAB for performing a number of subtomogram averaging tasks including template matching, high-resolution alignment and averaging, and classification.
Supplied is the source code, a set of example bash scripts, and instructions on how to compile and run STOPGAP. Pre-compiled binaries are also supplied; these were compiled using MATLAB R2020b.
A new addition to 0.7.4 is the "standalone" STOPGAP toolbox. This provides a minimal MATLAB terminal with full access to all the STOPGAP toolbox functions, without the need for a MATLAB license.
STOPGAP is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
STOPGAP is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.
STOPGAP 0.7.3
STOPGAP is a subtomogram averaging workflow written in MATLAB for performing a number of subtomogram averaging tasks including template matching, high-resolution alignment and averaging, and classification.
Supplied is the source code, a set of example bash scripts, and instructions on how to compile and run STOPGAP. Pre-compiled binaries are also supplied; these were compiled using MATLAB R2020b.
STOPGAP is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
STOPGAP is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.
STOPGAP 0.7.1
STOPGAP is a subtomogram averaging workflow written in MATLAB for performing a number of subtomogram averaging tasks including template matching, high-resolution alignment and averaging, and classification. STOPGAP has been rewritten from scratch and is no longer compatible with TOM/AV3-style files; it now uses its own .star files.
Supplied is the source code, a set of example bash scripts, and instructions on how to compile and run STOPGAP. Pre-compiled binaries are also supplied; these were compiled using MATLAB R2015b.
STOPGAP is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
STOPGAP is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.
STOPGAP 0.3.1
STOPGAP 0.3.1
STOPGAP is a subtomogram averaging workflow written in MATLAB for performing high-resolution subtomogram alignment and averaging. The source code and compiled MATLAB binaries are included. The source requires the TOM toolbox. STOPGAP is largely backwards compatible with TOM/AV3, and uses AV3-style motivelists and can use AV3-style wedgelists.
Supplied is the source code and compiled MATLAB binaries. Binaries were compiled using MATLAB R2015b. Also supplied with the binaries are bash files we use for running the binaries; we have STOPGAP installed as a module with $STOPGAPHOME as the main directory where STOPGAP is saved.
Also supplied are example script for running STOPGAP using MPI. The examples scripts are formatted for our SGE cluster.
These scripts are free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
The scripts provided are not intended to be a complete package, but are instead provided to show the algorithms used. They are distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.