#467 use v2 + deps + update R-bundle-CRAN

467_scNanoGPS/Liqa.eb

@@ -0,0 +1,37 @@
+easyblock = 'PythonPackage'
+
+name = 'Liqa'
+version = '1.3.4'
+
+homepage = "https://pypi.org/project/liqa/"
+description = """LIQA (Long-read Isoform Quantification and Analysis) is an Expectation-Maximization
+based statistical method to quantify isoform expression and detect differential alternative splicing (DAS)
+events using long-read RNA-seq data."""
+
+toolchain = {'name': 'gfbf', 'version': '2023a'}
+
+# Liqa deps:
+    # OK Python
+        # OK Pysam
+        # OK Numpy
+        # OK Scipy
+        # OK UPDATED Lifelines - already lifelines in synthcity not used 2023a
+    # OK R
+        # ADD_TO_CRAN gcmr
+        # OK betareg
+
+# builddependencies = [('poetry', '1.5.1')]
+dependencies = [
+    ('Python', '3.11.3'),
+    ('SciPy-bundle', '2023.07'),
+    ('Pysam', '0.22.0'),
+    ('lifelines', '0.28.0'),
+    ('R', '4.3.2'),
+    ('R-bundle-CRAN', '2023.12'),
+]
+
+use_pip = True
+sanity_pip_check = True
+download_dep_fail = True
+
+moduleclass = 'bio'