#271 phyluce progress

271_phyluce/Cbc-2.10.11-foss-2023a.eb

@@ -11,8 +11,9 @@ stand-alone executable."""
 toolchain = {'name': 'foss', 'version': '2023a'}
 toolchainopts = {'pic': True, 'usempi': True}
 
-source_urls = ['https://www.coin-or.org/download/source/%(name)s/']
-sources = [SOURCE_TGZ]
+source_urls = ['https://github.com/coin-or/Cbc/archive/refs/tags/releases/']
+sources = ['%(version)s.tar.gz']
+checksums = ['1fb591dd88336fdaf096b8e42e46111e41671a5eb85d4ee36e45baff1678bd33']
 
 builddependencies = [
     ('Autotools', '20220317'),

271_phyluce/pulp-2.8.0-foss-2023a.eb → 271_phyluce/PuLP-2.8.0-foss-2023a.eb

@@ -18,16 +18,19 @@ solve linear problems.
 toolchain = {'name': 'foss', 'version': '2023a'}
 
 sources = [SOURCE_TAR_GZ]
+checksums = ['4903bf96110bbab8ed2c68533f90565ebb76aa367d9e4df38e51bf727927c125']
 
 dependencies = [
-    ('Python', '3.11.3'),#done
-    ('GLPK', '5.0'),#done
-    ('Cbc', '2.10.5'),#NO!
+    ('Python', '3.11.3'),
+    ('GLPK', '5.0'),
+    ('Cbc', '2.10.11'),
 ]
 
 download_dep_fail = True
 use_pip = True
 
 sanity_pip_check = True
 
-moduleclass = 'tools'
+sanity_check_commands = ['pulptest']
+
+moduleclass = 'tools'

271_phyluce/snakemake.eb

@@ -8,20 +8,20 @@ description = "The Snakemake workflow management system is a tool to create repr
 
 toolchain = {'name': 'foss', 'version': '2023a'}
 
-dependencies = [
+dependencies = [ #ALL deps are ok
     ('Python', '3.11.3'),
     ('SciPy-bundle', '2023.07'),
     ('GitPython', '3.1.40'),
     ('IPython', '8.14.0'),
     ('PyYAML', '6.0'),
     ('wrapt', '1.15.0'),
-    # ('PuLP', '2.7.0'),#NO!
+    ('PuLP', '2.8.0'),
 ]
 
 use_pip = True
 sanity_pip_check = True
 
-exts_list = [
+exts_list = [ #TODO: update exts
     ('ConfigArgParse', '1.7', {
         'checksums': ['e7067471884de5478c58a511e529f0f9bd1c66bfef1dea90935438d6c23306d1'],
     }),