brew install fails on 2018 MB, High Sierra 10.13.4

[bryanskene]

bryan@Bryans-MB-Pro:~$ brew install saulpw/vd/visidata

[snip]

######################################################################## 100.0%
==> Downloading https://files.pythonhosted.org/packages/33/bc/fa0b5347139cd9564f0d44ebd2b147ac97c36b2403943dbee8a25fd74012/virtualenv-16.0.0.tar.gz
######################################################################## 100.0%
==> python3 -c import setuptools... --no-user-cfg install --prefix=/tmp/visidata--homebrew-virtualenv-20180525-92795-19ud9km/target --single-version-extern
Last 15 lines from /Users/bryan/Library/Logs/Homebrew/visidata/01.python3:
python3
-c
import setuptools, tokenize
file = 'setup.py'
exec(compile(getattr(tokenize, 'open', open)(file).read()
.replace('\r\n', '\n'), file, 'exec'))
--no-user-cfg
install
--prefix=/tmp/visidata--homebrew-virtualenv-20180525-92795-19ud9km/target
--single-version-externally-managed
--record=installed.txt

Traceback (most recent call last):
File "", line 1, in
ModuleNotFoundError: No module named 'setuptools'

[anjakefala]

Hi Bryan!

That is annoying :( Unfortunately, python environments are a bit of an environmental disaster, but I hope we manage to debug this.

Can you please share with me the outputs of brew doctor and brew config?

And also, the output of python -c "import sys; print sys.path"?

[bryanskene]

bryan@Bryans-MB-Pro:~$ brew install setuptools Error: No available formula with the name "setuptools" ==> Searching for a previously deleted formula (in the last month)... Warning: homebrew/core is shallow clone. To get complete history run: git -C "$(brew --repo homebrew/core)" fetch --unshallow Error: No previously deleted formula found. ==> Searching for similarly named formulae... ==> Searching local taps... Error: No similarly named formulae found. ==> Searching taps... ==> Searching taps on GitHub... Error: No formulae found in taps. bryan@Bryans-MB-Pro:~$ brew doctor Please note that these warnings are just used to help the Homebrew maintainers with debugging if you file an issue. If everything you use Homebrew for is working fine: please don't worry or file an issue; just ignore this. Thanks! Warning: You have unlinked kegs in your Cellar Leaving kegs unlinked can lead to build-trouble and cause brews that depend on those kegs to fail to run properly once built. Run `brew link` on these: python wireshark Warning: Your XQuartz (2.7.7) is outdated. Please install XQuartz 2.7.11 (or delete the current version). XQuartz can be updated using Homebrew-Cask by running brew cask reinstall xquartz Warning: Broken symlinks were found. Remove them with `brew prune`: /usr/local/bin/docker-credential-osxkeychain.backup /usr/local/bin/hyperkit.backup /usr/local/bin/notary.backup /usr/local/bin/vpnkit.backup /usr/local/etc/bash_completion.d/_brew_services /usr/local/opt/minicom Warning: Some installed formulae are missing dependencies. You should `brew install` the missing dependencies: brew install libmaxminddb libunistring [email protected] pcre Run `brew missing` for more details. bryan@Bryans-MB-Pro:~$ brew config HOMEBREW_VERSION: 1.6.6 ORIGIN: https://github.com/Homebrew/brew.git HEAD: e4c02fafdaef5676cf40dd6d16e74976cf54b265 Last commit: 4 days ago Core tap ORIGIN: https://github.com/Homebrew/homebrew-core Core tap HEAD: 5431542903ee2d6b7b9307165edcde44bcff7b32 Core tap last commit: 3 days ago HOMEBREW_PREFIX: /usr/local CPU: octa-core 64-bit kabylake Homebrew Ruby: 2.3.3 => /System/Library/Frameworks/Ruby.framework/Versions/2.3/usr/bin/ruby Clang: 9.1 build 902 Git: 2.8.2 => /usr/local/bin/git Curl: 7.54.0 => /usr/bin/curl Java: N/A macOS: 10.13.4-x86_64 CLT: N/A Xcode: 9.3.1 XQuartz: 2.7.7 => /opt/X11 bryan@Bryans-MB-Pro:~$ python -c "import sys; print sys.path" ['', '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python27.zip', '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7', '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/plat-darwin', '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/plat-mac', '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/plat-mac/lib-scriptpackages', '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-tk', '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-old', '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-dynload', '/Library/Python/2.7/site-packages', '/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python', '/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/PyObjC']

…

On May 26, 2018, at 11:09 AM, Anja Kefala ***@***.***> wrote: Hi Bryan! That is annoying :( Unfortunately, python environments are a bit of a mess <https://m.xkcd.com/1987/>, but I hope we manage to debug this. Can you please share with me the outputs of brew doctor and brew config? And also, the output of python -c "import sys; print sys.path"? — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#1 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AEIk8x-y8VxZiXWkMHgYyXT9tPBPNVXWks5t2ZpNgaJpZM4UO7U4>.

[anjakefala]

For the record. I had suggested the following series of commands:

1. Is there /usr/local/Frameworks and is it owned by you? Otherwise:

sudo mkdir -p /usr/local/Frameworks
sudo chown -R $(whoami) /usr/local/*

(in reference to Homebrew/homebrew-core#20985)

2. To use Python3 for install instead of system default Python2:

brew install python3
brew link python3

3. Then try installing visidata again:

brew install saulpw/vd/visidata

The issue persisted.

I then suggested:

    sudo mkdir -p /usr/local/include
    sudo chown -R $(whoami) $(brew --prefix)/*

(Reference: kickstarter/laptop#49)

   brew install saulpw/vd/visidata

2. If that fails

    brew install python
    brew postinstall python
    brew link python

(noting if there are errors in the output)
then

    brew install saulpw/vd/visidata

(Reference: https://github.com/Homebrew/homebrew-python/issues/216 and https://brew.sh/2018/04/09/homebrew-1.6.0/)

[bryanskene]

bryan@Bryans-MB-Pro:/usr/local$ brew install python Warning: python 3.6.5 is already installed and up-to-date To reinstall 3.6.5, run `brew reinstall python` bryan@Bryans-MB-Pro:/usr/local$ brew postinstall python ==> Postinstalling python ==> /usr/local/Cellar/python/3.6.5/bin/python3 -s setup.py --no-user-cfg install --force --verbose --install-scripts=/usr/local/Cellar/python/3.6.5/bin --i ==> /usr/local/Cellar/python/3.6.5/bin/python3 -s setup.py --no-user-cfg install --force --verbose --install-scripts=/usr/local/Cellar/python/3.6.5/bin --i ==> /usr/local/Cellar/python/3.6.5/bin/python3 -s setup.py --no-user-cfg install --force --verbose --install-scripts=/usr/local/Cellar/python/3.6.5/bin --i bryan@Bryans-MB-Pro:/usr/local$ brew link python Warning: Already linked: /usr/local/Cellar/python/3.6.5 To relink: brew unlink python && brew link python ... then possible success? bryan@Bryans-MB-Pro:/usr/local$ brew install saulpw/vd/visidata ==> Installing visidata from saulpw/vd ==> Downloading https://files.pythonhosted.org/packages/4f/f6/01acfae53ae901756bc7778fc8c6f1ee70d442b5190f8bfe7d54dd35bb19/visidata-1.2.tar.gz Already downloaded: /Users/bryan/Library/Caches/Homebrew/visidata-1.2.tar.gz ==> Downloading https://files.pythonhosted.org/packages/33/bc/fa0b5347139cd9564f0d44ebd2b147ac97c36b2403943dbee8a25fd74012/virtualenv-16.0.0.tar.gz Already downloaded: /Users/bryan/Library/Caches/Homebrew/visidata--homebrew-virtualenv-16.0.0.tar.gz ==> python3 -c import setuptools... --no-user-cfg install --prefix=/tmp/visidata--homebrew-virtualenv-20180530-15232-7msfb5/target --single-version-externa ==> python3 -s /tmp/visidata--homebrew-virtualenv-20180530-15232-7msfb5/target/bin/virtualenv -p python3 /usr/local/Cellar/visidata/1.2/libexec ==> Downloading https://files.pythonhosted.org/packages/16/d8/bc6316cf98419719bd59c91742194c111b6f2e85abac88e496adefaf7afe/six-1.11.0.tar.gz ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--six-20180530-15232-1tsl ==> Downloading https://files.pythonhosted.org/packages/54/bb/f1db86504f7a49e1d9b9301531181b00a1c7325dc85a29160ee3eaa73a54/python-dateutil-2.6.1.tar.gz ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--python-dateutil-2018053 ==> Downloading https://files.pythonhosted.org/packages/22/28/a99c42aea746e18382ad9fb36f64c1c1f04216f41797f2f0fa567da11388/et_xmlfile-1.0.1.tar.gz ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--et-xmlfile-20180530-152 ==> Downloading https://files.pythonhosted.org/packages/9b/fa/40beb2aa43a13f740dd5be367a10a03270043787833409c61b79e69f1dfd/jdcal-1.3.tar.gz ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--jdcal-20180530-15232-cb ==> Downloading https://files.pythonhosted.org/packages/8c/75/c4e557207c7ff3d217d002d4fee32b4e5dbfc5498e2a2c9ce6b5424c5e37/openpyxl-2.4.9.tar.gz ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--openpyxl-20180530-15232 ==> Downloading https://files.pythonhosted.org/packages/86/cf/bb010f16cefa8f26ac9329ca033134bcabc7a27f5c3d8de961bacc0f80b3/xlrd-1.1.0.tar.gz ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--xlrd-20180530-15232-17j ==> Downloading https://files.pythonhosted.org/packages/f4/bd/0467d62790828c23c47fc1dfa1b1f052b24efdf5290f071c7a91d0d82fd3/idna-2.6.tar.gz ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--idna-20180530-15232-1xk ==> Downloading https://files.pythonhosted.org/packages/23/3f/8be01c50ed24a4bd6b8da799839066ce0288f66f5e11f0367323467f0cbc/certifi-2017.11.5.tar.gz ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--certifi-20180530-15232- ==> Downloading https://files.pythonhosted.org/packages/fc/bb/a5768c230f9ddb03acc9ef3f0d4a3cf93462473795d18e9535498c8f929d/chardet-3.0.4.tar.gz ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--chardet-20180530-15232- ==> Downloading https://files.pythonhosted.org/packages/ee/11/7c59620aceedcc1ef65e156cc5ce5a24ef87be4107c2b74458464e437a5d/urllib3-1.22.tar.gz ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--urllib3-20180530-15232- ==> Downloading https://files.pythonhosted.org/packages/b0/e1/eab4fc3752e3d240468a8c0b284607899d2fbfb236a56b7377a329aa8d09/requests-2.18.4.tar.gz ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--requests-20180530-15232 ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata-20180530-15232-eitovq/vi 🍺 /usr/local/Cellar/visidata/1.2: 1,707 files, 16.6MB, built in 24 seconds bryan@Bryans-MB-Pro:/usr/local$

…

On May 30, 2018, at 3:59 PM, Anja Kefala ***@***.***> wrote: If that fails, please try: brew install python brew postinstall python brew link python (noting if there are errors in the output) then brew install saulpw/vd/visidata (Reference: Homebrew/homebrew-python#216 <https://github.com/Homebrew/homebrew-python/issues/216>)

[saulpw]

Well, after all that, can you run vd (without a special PATH and PYThONPATH)?

[bryanskene]

OK so that worked and just in time for Saul to come over tomorrow. (we were running out of a clone of the repo yesterday) Thank you Anja!

…

On May 30, 2018, at 5:57 PM, Bryan Skene ***@***.***> wrote: ***@***.***:/usr/local$ brew install python Warning: python 3.6.5 is already installed and up-to-date To reinstall 3.6.5, run `brew reinstall python` ***@***.***:/usr/local$ brew postinstall python ==> Postinstalling python ==> /usr/local/Cellar/python/3.6.5/bin/python3 -s setup.py --no-user-cfg install --force --verbose --install-scripts=/usr/local/Cellar/python/3.6.5/bin --i ==> /usr/local/Cellar/python/3.6.5/bin/python3 -s setup.py --no-user-cfg install --force --verbose --install-scripts=/usr/local/Cellar/python/3.6.5/bin --i ==> /usr/local/Cellar/python/3.6.5/bin/python3 -s setup.py --no-user-cfg install --force --verbose --install-scripts=/usr/local/Cellar/python/3.6.5/bin --i ***@***.***:/usr/local$ brew link python Warning: Already linked: /usr/local/Cellar/python/3.6.5 To relink: brew unlink python && brew link python ... then possible success? ***@***.***:/usr/local$ brew install saulpw/vd/visidata ==> Installing visidata from saulpw/vd ==> Downloading https://files.pythonhosted.org/packages/4f/f6/01acfae53ae901756bc7778fc8c6f1ee70d442b5190f8bfe7d54dd35bb19/visidata-1.2.tar.gz <https://files.pythonhosted.org/packages/4f/f6/01acfae53ae901756bc7778fc8c6f1ee70d442b5190f8bfe7d54dd35bb19/visidata-1.2.tar.gz> Already downloaded: /Users/bryan/Library/Caches/Homebrew/visidata-1.2.tar.gz ==> Downloading https://files.pythonhosted.org/packages/33/bc/fa0b5347139cd9564f0d44ebd2b147ac97c36b2403943dbee8a25fd74012/virtualenv-16.0.0.tar.gz <https://files.pythonhosted.org/packages/33/bc/fa0b5347139cd9564f0d44ebd2b147ac97c36b2403943dbee8a25fd74012/virtualenv-16.0.0.tar.gz> Already downloaded: /Users/bryan/Library/Caches/Homebrew/visidata--homebrew-virtualenv-16.0.0.tar.gz ==> python3 -c import setuptools... --no-user-cfg install --prefix=/tmp/visidata--homebrew-virtualenv-20180530-15232-7msfb5/target --single-version-externa ==> python3 -s /tmp/visidata--homebrew-virtualenv-20180530-15232-7msfb5/target/bin/virtualenv -p python3 /usr/local/Cellar/visidata/1.2/libexec ==> Downloading https://files.pythonhosted.org/packages/16/d8/bc6316cf98419719bd59c91742194c111b6f2e85abac88e496adefaf7afe/six-1.11.0.tar.gz <https://files.pythonhosted.org/packages/16/d8/bc6316cf98419719bd59c91742194c111b6f2e85abac88e496adefaf7afe/six-1.11.0.tar.gz> ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--six-20180530-15232-1tsl ==> Downloading https://files.pythonhosted.org/packages/54/bb/f1db86504f7a49e1d9b9301531181b00a1c7325dc85a29160ee3eaa73a54/python-dateutil-2.6.1.tar.gz <https://files.pythonhosted.org/packages/54/bb/f1db86504f7a49e1d9b9301531181b00a1c7325dc85a29160ee3eaa73a54/python-dateutil-2.6.1.tar.gz> ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--python-dateutil-2018053 ==> Downloading https://files.pythonhosted.org/packages/22/28/a99c42aea746e18382ad9fb36f64c1c1f04216f41797f2f0fa567da11388/et_xmlfile-1.0.1.tar.gz <https://files.pythonhosted.org/packages/22/28/a99c42aea746e18382ad9fb36f64c1c1f04216f41797f2f0fa567da11388/et_xmlfile-1.0.1.tar.gz> ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--et-xmlfile-20180530-152 ==> Downloading https://files.pythonhosted.org/packages/9b/fa/40beb2aa43a13f740dd5be367a10a03270043787833409c61b79e69f1dfd/jdcal-1.3.tar.gz <https://files.pythonhosted.org/packages/9b/fa/40beb2aa43a13f740dd5be367a10a03270043787833409c61b79e69f1dfd/jdcal-1.3.tar.gz> ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--jdcal-20180530-15232-cb ==> Downloading https://files.pythonhosted.org/packages/8c/75/c4e557207c7ff3d217d002d4fee32b4e5dbfc5498e2a2c9ce6b5424c5e37/openpyxl-2.4.9.tar.gz <https://files.pythonhosted.org/packages/8c/75/c4e557207c7ff3d217d002d4fee32b4e5dbfc5498e2a2c9ce6b5424c5e37/openpyxl-2.4.9.tar.gz> ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--openpyxl-20180530-15232 ==> Downloading https://files.pythonhosted.org/packages/86/cf/bb010f16cefa8f26ac9329ca033134bcabc7a27f5c3d8de961bacc0f80b3/xlrd-1.1.0.tar.gz <https://files.pythonhosted.org/packages/86/cf/bb010f16cefa8f26ac9329ca033134bcabc7a27f5c3d8de961bacc0f80b3/xlrd-1.1.0.tar.gz> ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--xlrd-20180530-15232-17j ==> Downloading https://files.pythonhosted.org/packages/f4/bd/0467d62790828c23c47fc1dfa1b1f052b24efdf5290f071c7a91d0d82fd3/idna-2.6.tar.gz <https://files.pythonhosted.org/packages/f4/bd/0467d62790828c23c47fc1dfa1b1f052b24efdf5290f071c7a91d0d82fd3/idna-2.6.tar.gz> ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--idna-20180530-15232-1xk ==> Downloading https://files.pythonhosted.org/packages/23/3f/8be01c50ed24a4bd6b8da799839066ce0288f66f5e11f0367323467f0cbc/certifi-2017.11.5.tar.gz <https://files.pythonhosted.org/packages/23/3f/8be01c50ed24a4bd6b8da799839066ce0288f66f5e11f0367323467f0cbc/certifi-2017.11.5.tar.gz> ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--certifi-20180530-15232- ==> Downloading https://files.pythonhosted.org/packages/fc/bb/a5768c230f9ddb03acc9ef3f0d4a3cf93462473795d18e9535498c8f929d/chardet-3.0.4.tar.gz <https://files.pythonhosted.org/packages/fc/bb/a5768c230f9ddb03acc9ef3f0d4a3cf93462473795d18e9535498c8f929d/chardet-3.0.4.tar.gz> ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--chardet-20180530-15232- ==> Downloading https://files.pythonhosted.org/packages/ee/11/7c59620aceedcc1ef65e156cc5ce5a24ef87be4107c2b74458464e437a5d/urllib3-1.22.tar.gz <https://files.pythonhosted.org/packages/ee/11/7c59620aceedcc1ef65e156cc5ce5a24ef87be4107c2b74458464e437a5d/urllib3-1.22.tar.gz> ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--urllib3-20180530-15232- ==> Downloading https://files.pythonhosted.org/packages/b0/e1/eab4fc3752e3d240468a8c0b284607899d2fbfb236a56b7377a329aa8d09/requests-2.18.4.tar.gz <https://files.pythonhosted.org/packages/b0/e1/eab4fc3752e3d240468a8c0b284607899d2fbfb236a56b7377a329aa8d09/requests-2.18.4.tar.gz> ######################################################################## 100.0% ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata--requests-20180530-15232 ==> /usr/local/Cellar/visidata/1.2/libexec/bin/pip install -v --no-deps --no-binary :all: --ignore-installed /private/tmp/visidata-20180530-15232-eitovq/vi 🍺 /usr/local/Cellar/visidata/1.2: 1,707 files, 16.6MB, built in 24 seconds ***@***.***:/usr/local$ > On May 30, 2018, at 3:59 PM, Anja Kefala ***@***.*** ***@***.***>> wrote: > > If that fails, please try: > brew install python > brew postinstall python > brew link python > (noting if there are errors in the output) > then > brew install saulpw/vd/visidata > (Reference: Homebrew/homebrew-python#216 <https://github.com/Homebrew/homebrew-python/issues/216>) >

[anjakefala]

!!!

<(^____^)>