nobody believes that adonis is deprecated: yield to public pressure

Discussed in github issue #523. Step 1 is to keep here 2.6-2 behaviour and print a message.
vegandevs · Sep 28, 2022 · 510c475 · 510c475
1 parent c962015
commit 510c475
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/R/adonis-deprecated.R b/R/adonis-deprecated.R
@@ -5,7 +5,9 @@
              contr.unordered="contr.sum", contr.ordered="contr.poly",
              parallel = getOption("mc.cores"), ...)
 {
-    .Deprecated("adonis2", package="vegan")
+    ## nobodody seems to believe that adonis is deprecated: give up
+    ## .Deprecated("adonis2", package="vegan")
+    message("'adonis' will be deprecated: use 'adonis2' instead")
     EPS <- sqrt(.Machine$double.eps) ## use with >= in permutation P-values
     ## formula is model formula such as Y ~ A + B*C where Y is a data
     ## frame or a matrix, and A, B, and C may be factors or continuous