Refactor MultiplexConsumer to MesmerConsumer. #160
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This was referenced Feb 26, 2021
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Ideally, this PR will also update to use However, the new |
Allows the user to provide the compartment on job creation.
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Refactor consumer names and the
MULTIPLEX_MODELtoMESMER_MODEL.This PR also allows the compartment to be passed to
.predictusing theMESMER_COMPARTMENTenvironment variable. The outputs are defined bydeepcell.applications.Mesmerbut will be multiple files in the same zip archive.However, this introduces an incompatibility with
kiosk-imagej-pluginwhich can only open a single tiff file from the zip file.deepcellis also updated to 0.9.0 which supports theMesmerapplication and drops support for Python 3.5.Fixes #136.