Version 0.16.0

[0.16.0] - 2021-05-28

Many bugfixes, thanks to @kirbyziegler, @irzhegalova, @wangmhan, @ClarissaFeuersteinAkgoz and @fgualdr for reporting and proposing solutions!
Thanks to @Maarten-vd-Sande for the speed improvements.

Added

• gimme motif2factors command to annotate a motif database with TFs from different species
  based on orthogroups.
• Informative error message with link to fix when cache is corrupted (running on a cluster).
• Print an informative error message if the input file is not in the correct format.

Changed

• Speed improvements to motif scanning, which is now up to 2X faster!
• Size of input regions is now automatically adjusted (#123, #128, #129)
• Quantile normalization in coverage_table now uses multiple CPUs.

Fixed

• Fixes issue where % of motif occurence would be incorrectly reported in gimme maelstrom output (#162).
• Fix issues with running Trawler (#181)
• Fix issues with running YAMDA (#180)
• Fix issues with parsing XXmotif output (#178)
• Fix issue where command line argument (such as single strand) are ignored (#177)
• Fix pyarrow dependency (#176)
• The correct % of regions with motif is now reported (#162)
• Fix issue with running gimme motifs with the HOMER database (#135)
• Fix issue with the --size parameter in gimme motifs, which now works as expected (#128)