fixes #178 (Parsing XXmotif output, thanks @kirbyziegler)

vanheeringen-lab · Apr 9, 2021 · db53846 · db53846
1 parent cbd75c9
commit db53846
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/gimmemotifs/tools/motifprogram.py b/gimmemotifs/tools/motifprogram.py
@@ -38,7 +38,7 @@ def _read_and_label_motifs(self, outfile, stdout, stderr, fmt="meme"):
             stderr += "\nMotif file {0} not found!\n".format(outfile)
             return [], stdout, stderr
 
-        motifs = read_motifs(outfile, fmt="meme")
+        motifs = read_motifs(outfile, fmt)
         for m in motifs:
             m.id = "{0}_{1}".format(self.name, m.id)
         return motifs, stdout, stderr