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| --- | ||
| site: freiburg | ||
| tags: [tools] | ||
| title: UseGalaxy.eu Tool Updates for 2024-09-12 | ||
| supporters: | ||
| - denbi | ||
| - elixir | ||
| --- | ||
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| On 2024-09-12, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #474](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#474/) | ||
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| ## Data and Metadata Management | ||
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| - eal_table_template was updated to [6de4b4f70b7b](https://toolshed.g2.bx.psu.edu/view/ecology/eal_table_template/6de4b4f70b7b) | ||
| - eal_table_template was updated to [c223db6625c1](https://toolshed.g2.bx.psu.edu/view/ecology/eal_table_template/c223db6625c1) | ||
| - eal_templates was updated to [3b0fa963ae3e](https://toolshed.g2.bx.psu.edu/view/ecology/eal_templates/3b0fa963ae3e) | ||
| - eal_templates was updated to [67b2cd9c2954](https://toolshed.g2.bx.psu.edu/view/ecology/eal_templates/67b2cd9c2954) | ||
| - eml2eal was updated to [0fa9d8240dc3](https://toolshed.g2.bx.psu.edu/view/ecology/eml2eal/0fa9d8240dc3) | ||
| - eml2eal was updated to [6fc2341a92cb](https://toolshed.g2.bx.psu.edu/view/ecology/eml2eal/6fc2341a92cb) | ||
| - entities_template was updated to [1b11e38718af](https://toolshed.g2.bx.psu.edu/view/ecology/entities_template/1b11e38718af) | ||
| - geo_cov_template was updated to [0fe3b8bd9d8b](https://toolshed.g2.bx.psu.edu/view/ecology/geo_cov_template/0fe3b8bd9d8b) | ||
| - geo_cov_template was updated to [d53b708cb348](https://toolshed.g2.bx.psu.edu/view/ecology/geo_cov_template/d53b708cb348) | ||
| - makeeml was updated to [4cf24a95c4ff](https://toolshed.g2.bx.psu.edu/view/ecology/makeeml/4cf24a95c4ff) | ||
| - raster_template was updated to [9eaf84bf856f](https://toolshed.g2.bx.psu.edu/view/ecology/raster_template/9eaf84bf856f) | ||
| - taxo_cov_template was updated to [20224597fa2c](https://toolshed.g2.bx.psu.edu/view/ecology/taxo_cov_template/20224597fa2c) | ||
| - vector_template was updated to [330f15f2ad3f](https://toolshed.g2.bx.psu.edu/view/ecology/vector_template/330f15f2ad3f) | ||
| - vector_template was updated to [c65dd54f9807](https://toolshed.g2.bx.psu.edu/view/ecology/vector_template/c65dd54f9807) | ||
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| ## Ecoregionalization | ||
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| - ecoregion_brt_analysis was updated to [f0d6938d0451](https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_brt_analysis/f0d6938d0451) | ||
| - ecoregion_clara_cluster was updated to [32849c52aa54](https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_clara_cluster/32849c52aa54) | ||
| - ecoregion_cluster_estimate was updated to [0f6542d0986e](https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_cluster_estimate/0f6542d0986e) | ||
| - ecoregion_eco_map was updated to [3d750279158b](https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_eco_map/3d750279158b) | ||
| - ecoregion_taxa_seeker was updated to [9dc992f80c25](https://toolshed.g2.bx.psu.edu/view/ecology/ecoregion_taxa_seeker/9dc992f80c25) | ||
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| ## QIIME 2 | ||
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| - qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) | ||
| - qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623) | ||
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| ## Proteomics | ||
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| - openms_openpepxl was updated to [a2a842b00f9c](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c) | ||
| - openms_percolatoradapter was updated to [0fc9ae55bcfc](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc) | ||
| - openms_percolatoradapter was updated to [e7881a82b56d](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d) | ||
| - openms_xfdr was updated to [81402a5e4173](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173) | ||
| - openms_xfdr was updated to [9a6e3bb0f358](https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358) | ||
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| ## Annotation | ||
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| - abritamr was updated to [e909d3bc4687](https://toolshed.g2.bx.psu.edu/view/iuc/abritamr/e909d3bc4687) | ||
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| ## Convert Formats | ||
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| - samtools_bam_to_cram was updated to [18dbde5680c0](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_bam_to_cram/18dbde5680c0) | ||
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| ## Metagenomic Analysis | ||
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| - biobox_add_taxid was updated to [8d0b2def5e65](https://toolshed.g2.bx.psu.edu/view/iuc/biobox_add_taxid/8d0b2def5e65) | ||
| - cami_amber was updated to [e30bc6da7a36](https://toolshed.g2.bx.psu.edu/view/iuc/cami_amber/e30bc6da7a36) | ||
| - cami_amber_add was updated to [04f8949026bf](https://toolshed.g2.bx.psu.edu/view/iuc/cami_amber_add/04f8949026bf) | ||
| - cami_amber_convert was updated to [bc40aa3adf28](https://toolshed.g2.bx.psu.edu/view/iuc/cami_amber_convert/bc40aa3adf28) | ||
| - customize_metaphlan_database was updated to [25a5fa5f86a5](https://toolshed.g2.bx.psu.edu/view/iuc/customize_metaphlan_database/25a5fa5f86a5) | ||
| - extract_metaphlan_database was updated to [db58d5898fea](https://toolshed.g2.bx.psu.edu/view/iuc/extract_metaphlan_database/db58d5898fea) | ||
| - maaslin2 was updated to [f4580402a2a2](https://toolshed.g2.bx.psu.edu/view/iuc/maaslin2/f4580402a2a2) | ||
| - merge_metaphlan_tables was updated to [3cc4a60615c0](https://toolshed.g2.bx.psu.edu/view/iuc/merge_metaphlan_tables/3cc4a60615c0) | ||
| - metaphlan was updated to [ef65b083bd0c](https://toolshed.g2.bx.psu.edu/view/iuc/metaphlan/ef65b083bd0c) | ||
| - virannot_blast2tsv was updated to [f8ebd1e802d7](https://toolshed.g2.bx.psu.edu/view/iuc/virannot_blast2tsv/f8ebd1e802d7) | ||
| - virannot_otu was updated to [40fb54cc6628](https://toolshed.g2.bx.psu.edu/view/iuc/virannot_otu/40fb54cc6628) | ||
| - virannot_rps2tsv was updated to [d1fd5579469d](https://toolshed.g2.bx.psu.edu/view/iuc/virannot_rps2tsv/d1fd5579469d) | ||
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| ## Nanopore | ||
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| - clair3 was updated to [3843a30053ee](https://toolshed.g2.bx.psu.edu/view/iuc/clair3/3843a30053ee) | ||
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| ## Phylogenetics | ||
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| - hyphy_prime was updated to [4072360120e4](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_prime/4072360120e4) | ||
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| ## SAM/BAM | ||
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| - samtools_calmd was updated to [26b4f9f98aca](https://toolshed.g2.bx.psu.edu/view/devteam/samtools_calmd/26b4f9f98aca) | ||
| - samtools_reheader was updated to [85e38b31e8b3](https://toolshed.g2.bx.psu.edu/view/devteam/samtools_reheader/85e38b31e8b3) | ||
| - samtools_slice_bam was updated to [b8beef827165](https://toolshed.g2.bx.psu.edu/view/devteam/samtools_slice_bam/b8beef827165) | ||
| - samtools_sort was updated to [d54a4df48867](https://toolshed.g2.bx.psu.edu/view/devteam/samtools_sort/d54a4df48867) | ||
| - samtools_split was updated to [818030fa6bbf](https://toolshed.g2.bx.psu.edu/view/devteam/samtools_split/818030fa6bbf) | ||
| - samtools_stats was updated to [541082d03bef](https://toolshed.g2.bx.psu.edu/view/devteam/samtools_stats/541082d03bef) | ||
| - samtools_ampliconclip was updated to [4967154b9859](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_ampliconclip/4967154b9859) | ||
| - samtools_fastx was updated to [b906586a6596](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_fastx/b906586a6596) | ||
| - samtools_fixmate was updated to [d2df79922531](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_fixmate/d2df79922531) | ||
| - samtools_markdup was updated to [40fa6c240105](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_markdup/40fa6c240105) | ||
| - samtools_merge was updated to [cae2794d2deb](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_merge/cae2794d2deb) | ||
| - samtools_view was updated to [32dc5f781059](https://toolshed.g2.bx.psu.edu/view/iuc/samtools_view/32dc5f781059) | ||
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| ## None | ||
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| - data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) | ||
| - data_manager_metaphlan_database_downloader was updated to [2c61c30a57e7](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_metaphlan_database_downloader/2c61c30a57e7) | ||
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