-
Notifications
You must be signed in to change notification settings - Fork 115
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
UseGalaxy.EU Jenkins Bot
committed
Nov 17, 2024
1 parent
3495515
commit 121a625
Showing
1 changed file
with
140 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,140 @@ | ||
| --- | ||
| site: freiburg | ||
| tags: [tools] | ||
| title: UseGalaxy.eu Tool Updates for 2024-11-17 | ||
| supporters: | ||
| - denbi | ||
| - elixir | ||
| --- | ||
|
|
||
| On 2024-11-17, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #487](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#487/) | ||
|
|
||
|
|
||
| ## Metabolomics | ||
|
|
||
| - matchms_add_key was updated to [a5d41764722d](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_add_key/a5d41764722d) | ||
| - matchms_convert was updated to [9e83636da9d3](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_convert/9e83636da9d3) | ||
| - matchms_filtering was updated to [83c4b4359ac4](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_filtering/83c4b4359ac4) | ||
| - matchms_fingerprint_similarity was updated to [fd890f162ce6](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_fingerprint_similarity/fd890f162ce6) | ||
| - matchms_formatter was updated to [a5a5b147da70](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_formatter/a5a5b147da70) | ||
| - matchms_metadata_export was updated to [8832425b1ff6](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_export/8832425b1ff6) | ||
| - matchms_metadata_match was updated to [330b0dfae8da](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_match/330b0dfae8da) | ||
| - matchms_metadata_merge was updated to [1fd950c5586a](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_merge/1fd950c5586a) | ||
| - matchms_networking was updated to [f04b378325e5](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_networking/f04b378325e5) | ||
| - matchms_remove_key was updated to [fbdb2ae524df](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_remove_key/fbdb2ae524df) | ||
| - matchms_remove_spectra was updated to [d50ce2f51fc0](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_remove_spectra/d50ce2f51fc0) | ||
| - matchms_spectral_similarity was updated to [7ba589b01dbc](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_spectral_similarity/7ba589b01dbc) | ||
| - matchms_split was updated to [ea6c5636c0cf](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_split/ea6c5636c0cf) | ||
| - matchms_subsetting was updated to [5bbd1a8404f5](https://toolshed.g2.bx.psu.edu/view/recetox/matchms_subsetting/5bbd1a8404f5) | ||
|
|
||
| ## QIIME 2 | ||
|
|
||
| - qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) | ||
| - qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623) | ||
|
|
||
| ## Machine Learning | ||
|
|
||
| - sklearn_clf_metrics was updated to [15bcf1a7543b](https://toolshed.g2.bx.psu.edu/view/bgruening/sklearn_clf_metrics/15bcf1a7543b) | ||
|
|
||
| ## Assembly | ||
|
|
||
| - pretext_graph was updated to [408ece2e4647](https://toolshed.g2.bx.psu.edu/view/iuc/pretext_graph/408ece2e4647) | ||
| - pretext_map was updated to [511e5e3cd55e](https://toolshed.g2.bx.psu.edu/view/iuc/pretext_map/511e5e3cd55e) | ||
| - pretext_map was updated to [c6cec5ab35c1](https://toolshed.g2.bx.psu.edu/view/iuc/pretext_map/c6cec5ab35c1) | ||
| - quast was updated to [a3b35edea53a](https://toolshed.g2.bx.psu.edu/view/iuc/quast/a3b35edea53a) | ||
|
|
||
| ## Annotation | ||
|
|
||
| - tbprofiler was updated to [8cb134b8c1a5](https://toolshed.g2.bx.psu.edu/view/iuc/tbprofiler/8cb134b8c1a5) | ||
|
|
||
| ## FASTA/FASTQ | ||
|
|
||
| - fastp was updated to [a626e8c0e1ba](https://toolshed.g2.bx.psu.edu/view/iuc/fastp/a626e8c0e1ba) | ||
|
|
||
| ## Filter and Sort | ||
|
|
||
| - bigwig_outlier_bed was updated to [bae6cba73e32](https://toolshed.g2.bx.psu.edu/view/iuc/bigwig_outlier_bed/bae6cba73e32) | ||
|
|
||
| ## Genome Diversity | ||
|
|
||
| - fasttree was updated to [ef46a404db96](https://toolshed.g2.bx.psu.edu/view/iuc/fasttree/ef46a404db96) | ||
|
|
||
| ## Get Data | ||
|
|
||
| - fastq_dl was updated to [5e7401777990](https://toolshed.g2.bx.psu.edu/view/iuc/fastq_dl/5e7401777990) | ||
|
|
||
| ## Graph/Display Data | ||
|
|
||
| - pretext_snapshot was updated to [26f2fe7e53a1](https://toolshed.g2.bx.psu.edu/view/iuc/pretext_snapshot/26f2fe7e53a1) | ||
|
|
||
| ## Metagenomic Analysis | ||
|
|
||
| - ampvis2_alpha_diversity was updated to [bd518ee51da5](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_alpha_diversity/bd518ee51da5) | ||
| - ampvis2_boxplot was updated to [5e4e2b612a4f](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_boxplot/5e4e2b612a4f) | ||
| - ampvis2_core was updated to [2bbf288d6334](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_core/2bbf288d6334) | ||
| - ampvis2_core was updated to [e595eafb5ecf](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_core/e595eafb5ecf) | ||
| - ampvis2_export_fasta was updated to [0cce683798d3](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_export_fasta/0cce683798d3) | ||
| - ampvis2_export_fasta was updated to [3fd332f614f3](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_export_fasta/3fd332f614f3) | ||
| - ampvis2_frequency was updated to [ac3774320d28](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_frequency/ac3774320d28) | ||
| - ampvis2_heatmap was updated to [c980e4bd48f2](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_heatmap/c980e4bd48f2) | ||
| - ampvis2_load was updated to [576dd33588bf](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_load/576dd33588bf) | ||
| - ampvis2_load was updated to [738474880da8](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_load/738474880da8) | ||
| - ampvis2_merge_ampvis2 was updated to [2f9731cc4c87](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_merge_ampvis2/2f9731cc4c87) | ||
| - ampvis2_merge_ampvis2 was updated to [378ce300fb3d](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_merge_ampvis2/378ce300fb3d) | ||
| - ampvis2_mergereplicates was updated to [1f6f3bc6edd1](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_mergereplicates/1f6f3bc6edd1) | ||
| - ampvis2_mergereplicates was updated to [f34ea612eecf](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_mergereplicates/f34ea612eecf) | ||
| - ampvis2_octave was updated to [33087ecbd8f4](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_octave/33087ecbd8f4) | ||
| - ampvis2_ordinate was updated to [7825694588d6](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_ordinate/7825694588d6) | ||
| - ampvis2_otu_network was updated to [454bfdfa6de5](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_otu_network/454bfdfa6de5) | ||
| - ampvis2_otu_network was updated to [bb054c50a96c](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_otu_network/bb054c50a96c) | ||
| - ampvis2_rankabundance was updated to [18de61c5527c](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_rankabundance/18de61c5527c) | ||
| - ampvis2_rankabundance was updated to [cf0944377d87](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_rankabundance/cf0944377d87) | ||
| - ampvis2_rarecurve was updated to [094d0b97f92c](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_rarecurve/094d0b97f92c) | ||
| - ampvis2_setmetadata was updated to [a9dacd650ad5](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_setmetadata/a9dacd650ad5) | ||
| - ampvis2_subset_samples was updated to [f9fa155c191f](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_subset_samples/f9fa155c191f) | ||
| - ampvis2_subset_samples was updated to [ff07f41b8e54](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_subset_samples/ff07f41b8e54) | ||
| - ampvis2_subset_taxa was updated to [76cb398e9110](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_subset_taxa/76cb398e9110) | ||
| - ampvis2_timeseries was updated to [bd41251e42ec](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_timeseries/bd41251e42ec) | ||
| - ampvis2_venn was updated to [bbb4a531d80b](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_venn/bbb4a531d80b) | ||
| - ampvis2_venn was updated to [f28f2faad83b](https://toolshed.g2.bx.psu.edu/view/iuc/ampvis2_venn/f28f2faad83b) | ||
| - polypolish was updated to [915637bd1d1a](https://toolshed.g2.bx.psu.edu/view/iuc/polypolish/915637bd1d1a) | ||
|
|
||
| ## Multiple Alignments | ||
|
|
||
| - trimal was updated to [ebe28cac8d8b](https://toolshed.g2.bx.psu.edu/view/iuc/trimal/ebe28cac8d8b) | ||
|
|
||
| ## Phylogenetics | ||
|
|
||
| - hyphy_bgm was updated to [a54340ea0866](https://toolshed.g2.bx.psu.edu/view/iuc/hyphy_bgm/a54340ea0866) | ||
|
|
||
| ## Variant Calling | ||
|
|
||
| - sniffles was updated to [ceff2f6a5368](https://toolshed.g2.bx.psu.edu/view/iuc/sniffles/ceff2f6a5368) | ||
|
|
||
| ## Virology | ||
|
|
||
| - freyja_aggregate_plot was updated to [54acd5139cab](https://toolshed.g2.bx.psu.edu/view/iuc/freyja_aggregate_plot/54acd5139cab) | ||
| - freyja_boot was updated to [16331f8cff98](https://toolshed.g2.bx.psu.edu/view/iuc/freyja_boot/16331f8cff98) | ||
| - freyja_demix was updated to [c5f2ce99da69](https://toolshed.g2.bx.psu.edu/view/iuc/freyja_demix/c5f2ce99da69) | ||
| - freyja_variants was updated to [d17f930148a5](https://toolshed.g2.bx.psu.edu/view/iuc/freyja_variants/d17f930148a5) | ||
| - snipit was updated to [877e80114d25](https://toolshed.g2.bx.psu.edu/view/iuc/snipit/877e80114d25) | ||
|
|
||
| ## None | ||
|
|
||
| - data_manager_build_kraken2_database was updated to [e9ee4d074d5d](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_build_kraken2_database/e9ee4d074d5d) | ||
| - data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) | ||
|
|
||
| ## RNA Analysis | ||
|
|
||
| - infernal was updated to [1d74ed49cf41](https://toolshed.g2.bx.psu.edu/view/bgruening/infernal/1d74ed49cf41) | ||
|
|
||
| ## XAS (X-ray Absorption Spectroscopy) | ||
|
|
||
| - larch_artemis was updated to [e0407f36fcea](https://toolshed.g2.bx.psu.edu/view/muon-spectroscopy-computational-project/larch_artemis/e0407f36fcea) | ||
| - larch_athena was updated to [6e94ae7d1ca1](https://toolshed.g2.bx.psu.edu/view/muon-spectroscopy-computational-project/larch_athena/6e94ae7d1ca1) | ||
| - larch_criteria_report was updated to [aa9cb2b42741](https://toolshed.g2.bx.psu.edu/view/muon-spectroscopy-computational-project/larch_criteria_report/aa9cb2b42741) | ||
| - larch_feff was updated to [8ee492af5586](https://toolshed.g2.bx.psu.edu/view/muon-spectroscopy-computational-project/larch_feff/8ee492af5586) | ||
| - larch_lcf was updated to [90a69f15ab92](https://toolshed.g2.bx.psu.edu/view/muon-spectroscopy-computational-project/larch_lcf/90a69f15ab92) | ||
| - larch_plot was updated to [0339eb694129](https://toolshed.g2.bx.psu.edu/view/muon-spectroscopy-computational-project/larch_plot/0339eb694129) | ||
| - larch_select_paths was updated to [204c4afe2f1e](https://toolshed.g2.bx.psu.edu/view/muon-spectroscopy-computational-project/larch_select_paths/204c4afe2f1e) | ||
|
|