Merge pull request #142 from TomHarrop/dorado_update

Dorado update
usegalaxy-au · Oct 22, 2024 · 6961f31 · 6961f31
2 parents c8e1e09 + f20611e
commit 6961f31
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Showing 4 changed files with 96 additions and 61 deletions.
diff --git a/tools/dorado/dorado.xml b/tools/dorado/dorado.xml
@@ -181,4 +181,5 @@ Model Version Number (``v4.3.0``):
       and higher version numbers typically signify greater accuracy.
 
     ]]></help>
+    <expand macro="citation"/>
 </tool>
diff --git a/tools/dorado/dorado_pod5_convert.xml b/tools/dorado/dorado_pod5_convert.xml
@@ -55,4 +55,5 @@ input_fast5
         Galaxy.
 
             ]]></help>
+    <expand macro="citation"/>
 </tool>
diff --git a/tools/dorado/macros.xml b/tools/dorado/macros.xml
@@ -1,7 +1,7 @@
 <macros>
     <!-- UPDATING: pull the latest container and check the version. Update both tokens. You MUST also update the model list. See README.md for more.  -->
-    <token name="@VERSION@">0.7.3+6e6c45c</token>
-    <token name="@CONTAINER_HASH@">4fa3fd6a5b5ed1b6256500c4368f7dae9c43df97</token>
+    <token name="@VERSION@">0.8.2+6b413c9</token>
+    <token name="@CONTAINER_HASH@">ae1d5e75f94041e4fd7af4a7ed6e6432b0eaea29</token>
     <xml name="requirements">
         <requirements>
             <container type="docker">nanoporetech/dorado:sha@CONTAINER_HASH@</container>
@@ -12,4 +12,16 @@
             <xref type="bio.tools">dorado</xref>
         </xrefs>
     </xml>
+    <xml name="citation">
+        <citations>
+            <citation type="bibtex">
+                @misc{dorado,
+                    title = {Dorado},
+                    author = {{Oxford Nanopore}},
+                    year = {2024},
+                    url = {https://github.com/nanoporetech/dorado/},
+                    }
+            </citation>
+        </citations>
+    </xml>
 </macros>
-Original file line number
+Diff line change
@@ Expand Up / @@ -55,4 +55,5 @@ input_fast5 @@
             Galaxy.
                 ]]></help>
+        <expand macro="citation"/>
     </tool>