Update tpv on production to version 2.2.0

[cat-bro]

Update tpv on production to 2.1.0.

Job destinations are defined in tpv destinations.yml.j2 instead of job conf.
Job conf limits are now in aarnet.usegalaxy.org.au and templated into the job conf.
Pull request linting has updated to check templating of files as well as tpv lint.
TPV shared rules for tools will be used in addition to Galaxy Australia's tool rules. GA's rules take precedence.
GA tool rules now always have mem values and rule IDs.
This PR also removes some legacy dtd code.

I'm changing this from 'draft' to 'ready for review' but it can't be merged without first disabling the automatic copying of tpv files to production. I'd like to merge this early in the day when there is a lower rate of job submission.

[cat-bro]

Tool specifications in tools.yml have previously had lowest cores/mem as default and higher resource allocations set in conditional rules. This changes to have the non-failing condition with the highest cores/mem as default and lower resource allocations set in conditional rules, e.g. deeptools_plot_heatmap

  toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_heatmap/deeptools_plot_heatmap/.*:
    cores: 3
    rules:
    - if: input_size >= 0.3
      cores: 7

changes to

  toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_heatmap/deeptools_plot_heatmap/.*:
    cores: 7
    mem: 26.9
    rules:
    - id: deeptools_plot_heatmap_small_input_rule
      if: input_size < 0.3
      cores: 3
      mem: 11.5

Using this convention should make it easier to switch to using a shared database rule for a tool. If we wanted to use shared_db for deeptools_plot_heatmap we could either delete the entry entirely or delete {cores: 7, mem: 26.9} from the above and keep using the small input rule.

[cat-bro]

This PR doesn't change the rank function in any way but I do think it needs to change. I'm working on alternatives to the rank function on dev. We can swap the rank function later on when we have seen what the new edge cases will be on production.

[nuwang]

We can make a release of tpv immediately so you can use this instead?

[cat-bro]

That would be good!

[nuwang]

LGTM!