fixed LDA-unfolddecode finally :-) #19
Annotations
3 errors and 2 warnings
Documentation:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@example` block in src/literate/HowTo/overlapcorrectedLDA_options.md:52-61
```@example overlapcorrectedLDA_options
ldaModel = LDA(method=:whiten, cov_w=SimpleCovariance(), cov_b=SimpleCovariance(), regcoef=1e-3)
uf_lda = fit(UnfoldDecodingModel, des, evt, dat, ldaModel, "eventA" => :condition;
nfolds=2,# only 2 folds to speed up computation
UnfoldFitkwargs=(; solver=customsolver), #customer solver for fun
eventcolumn=:event, # actually the default, but maybe your event dataframe has a different name?
multithreading=false) # who needs speed anyway :shrug:
plot_erp(coeftable(uf_lda))
```
exception =
MethodError: no method matching basisname(::Unfold.UnfoldLinearModelContinuousTime{Float64})
Closest candidates are:
basisname(!Matched::Vector{<:StatsModels.FormulaTerm})
@ Unfold ~/.julia/packages/Unfold/qjDWM/src/basisfunctions.jl:221
Stacktrace:
[1] singletrials(dat::Matrix{Float64}, uf_train::Unfold.UnfoldLinearModelContinuousTime{Float64}, tbltrain::DataFrames.SubDataFrame{DataFrames.DataFrame, DataFrames.Index, Vector{Int64}}, target_eventname::String, eventcolumn::Symbol)
@ UnfoldDecode ~/work/UnfoldDecode.jl/UnfoldDecode.jl/src/overlap_corrected.jl:10
[2] fit(UnfoldDecodingModel::Type{UnfoldDecodingModel}, design::Vector{Pair{String, Tuple{StatsModels.FormulaTerm{StatsModels.ConstantTerm{Int64}}, Unfold.FIRBasis}}}, tbl::DataFrames.DataFrame, dat::Matrix{Float64}, model::MLJMultivariateStatsInterface.LDA, target::Pair{String, Symbol}; nfolds::Int64, eventcolumn::Symbol, UnfoldFitkwargs::@NamedTuple{solver::Main.__atexample__named__overlapcorrectedLDA_options.var"#1#2"}, multithreading::Bool)
@ UnfoldDecode ~/work/UnfoldDecode.jl/UnfoldDecode.jl/src/fit.jl:44
[3] top-level scope
@ overlapcorrectedLDA_options.md:55
[4] eval
@ ./boot.jl:385 [inlined]
[5] #58
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined]
[6] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[7] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753
[8] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[9] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[10] with_logger
@ ./logging.jl:627 [inlined]
[11] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[12] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
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Documentation:
../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L44
failed to run `@example` block in src/literate/tutorials/overlapcorrectedLDA.md:45-50
```@example overlapcorrectedLDA
using MLJ, MultivariateStats, MLJMultivariateStatsInterface
LDA = @load LDA pkg = MultivariateStats
uf_lda = fit(UnfoldDecodingModel, des, evt, dat, LDA(), Any => :condition; nfolds=2) # 2 folds to speed up computation
plot_erp(coeftable(uf_lda))
```
exception =
MethodError: no method matching basisname(::Unfold.UnfoldLinearModelContinuousTime{Float64})
Closest candidates are:
basisname(!Matched::Vector{<:StatsModels.FormulaTerm})
@ Unfold ~/.julia/packages/Unfold/qjDWM/src/basisfunctions.jl:221
Stacktrace:
[1] singletrials(dat::Matrix{Float64}, uf_train::Unfold.UnfoldLinearModelContinuousTime{Float64}, tbltrain::DataFrames.SubDataFrame{DataFrames.DataFrame, DataFrames.Index, Vector{Int64}}, target_eventname::Type, eventcolumn::Symbol)
@ UnfoldDecode ~/work/UnfoldDecode.jl/UnfoldDecode.jl/src/overlap_corrected.jl:10
[2] fit(UnfoldDecodingModel::Type{UnfoldDecodingModel}, design::Vector{Pair{DataType, Tuple{StatsModels.FormulaTerm{StatsModels.ConstantTerm{Int64}, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term}}, Unfold.FIRBasis}}}, tbl::DataFrames.DataFrame, dat::Matrix{Float64}, model::MLJMultivariateStatsInterface.LDA, target::Pair{DataType, Symbol}; nfolds::Int64, eventcolumn::Symbol, UnfoldFitkwargs::@NamedTuple{}, multithreading::Bool)
@ UnfoldDecode ~/work/UnfoldDecode.jl/UnfoldDecode.jl/src/fit.jl:44
[3] top-level scope
@ overlapcorrectedLDA.md:48
[4] eval
@ ./boot.jl:385 [inlined]
[5] #58
@ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined]
[6] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[7] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753
[8] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161
[9] with_logstate(f::Function, logstate::Any)
@ Base.CoreLogging ./logging.jl:515
[10] with_logger
@ ./logging.jl:627 [inlined]
[11] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer)
@ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158
[12] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
|
Documentation
Process completed with exit code 1.
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Documentation
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