copy b2b #13
Annotations
6 errors
Documentation:
docs/experimental.jl#L321
Hint-handler #41 for MethodError in ImageCore caused an error
|
Documentation:
../../../.julia/packages/Documenter/1HwWe/src/utilities/utilities.jl#L44
failed to run `@example` block in src/literate/HowTo/overlapcorrectedLDA_options.md:38-42
```@example overlapcorrectedLDA_options
customsolver = (x,y)->Unfold.solver_default(x,y;stderror=true)
uf = Unfold.fit(UnfoldModel,des,evt,dat[1,:];solver=customsolver);
plot_erp(coeftable(uf))
```
exception =
MethodError: no method matching Union{Missing, Float64}(::Bool)
Stacktrace:
[1] Matrix{Union{Missing, Float64}}(s::LinearAlgebra.UniformScaling{Bool}, dims::Tuple{Int64, Int64})
@ LinearAlgebra /opt/hostedtoolcache/julia/1.10.0/x64/share/julia/stdlib/v1.10/LinearAlgebra/src/uniformscaling.jl:408
[2] Matrix{Union{Missing, Float64}}(s::LinearAlgebra.UniformScaling{Bool}, m::Int64, n::Int64)
@ LinearAlgebra /opt/hostedtoolcache/julia/1.10.0/x64/share/julia/stdlib/v1.10/LinearAlgebra/src/uniformscaling.jl:414
[3] inv!(A::LinearAlgebra.LU{Union{Missing, Float64}, Matrix{Union{Missing, Float64}}, Vector{Int64}})
@ LinearAlgebra /opt/hostedtoolcache/julia/1.10.0/x64/share/julia/stdlib/v1.10/LinearAlgebra/src/lu.jl:491
[4] inv(A::Matrix{Union{Missing, Float64}})
@ LinearAlgebra /opt/hostedtoolcache/julia/1.10.0/x64/share/julia/stdlib/v1.10/LinearAlgebra/src/dense.jl:917
[5] calculate_stderror(Xdc::SparseArrays.SparseMatrixCSC{Union{Missing, Float64}, Int64}, data::Matrix{Float64}, beta::Matrix{Float64})
@ Unfold ~/.julia/packages/Unfold/3KeNp/src/solver.jl:49
[6] solver_default(X::SparseArrays.SparseMatrixCSC{Union{Missing, Float64}, Int64}, data::Matrix{Float64}; stderror::Bool, multithreading::Bool, showprogress::Bool)
@ Unfold ~/.julia/packages/Unfold/3KeNp/src/solver.jl:28
[7] solver_default
@ Unfold ~/.julia/packages/Unfold/3KeNp/src/solver.jl:2 [inlined]
[8] (::Main.__atexample__named__overlapcorrectedLDA_options.var"#1#2")(x::SparseArrays.SparseMatrixCSC{Union{Missing, Float64}, Int64}, y::Matrix{Float64})
@ Main.__atexample__named__overlapcorrectedLDA_options ./overlapcorrectedLDA_options.md:39
[9] fit!(uf::Unfold.UnfoldLinearModelContinuousTime, data::Matrix{Float64}; solver::Main.__atexample__named__overlapcorrectedLDA_options.var"#1#2", kwargs::@kwargs{})
@ Unfold ~/.julia/packages/Unfold/3KeNp/src/fit.jl:218
[10] fit!
@ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:169 [inlined]
[11] #fit#25
@ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:73 [inlined]
[12] fit
@ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:64 [inlined]
[13] fit(::Unfold.UnfoldLinearModelContinuousTime, ::Dict{String, Tuple{StatsModels.FormulaTerm{StatsModels.ConstantTerm{Int64}}, Unfold.FIRBasis}}, ::DataFrames.DataFrame, ::Vector{Float64}; kwargs::@kwargs{solver::Main.__atexample__named__overlapcorrectedLDA_options.var"#1#2"})
@ Unfold ~/.julia/packages/Unfold/3KeNp/src/fit.jl:150
[14] fit
@ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:140 [inlined]
[15] #fit#24
@ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:60 [inlined]
[16] fit
@ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:53 [inlined]
[17] fit(UnfoldModelType::Type{Unfold.UnfoldModel}, design::Dict{String, Tuple{StatsModels.FormulaTerm{StatsModels.ConstantTerm{Int64}}, Unfold.FIRBasis}}, tbl::DataFrames.DataFrame, data::Vector{Float64}; kwargs::@kwargs{solver::Main.__atexample__named__overlapcorrectedLDA_options.var"#1#2"})
@ Unfold ~/.julia/packages/Unfold/3KeNp/src/fit.jl:49
[18] top-level scope
@ overlapcorrectedLDA_options.md:39
[19] eval
@ ./boot.jl:385 [inlined]
[20] #58
@ ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:754 [inlined]
[21] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[22] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:753
[23] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{B
|
Documentation:
docs/experimental.jl#L321
Hint-handler #41 for MethodError in ImageCore caused an error
|
Documentation:
../../../.julia/packages/Documenter/1HwWe/src/utilities/utilities.jl#L44
failed to run `@example` block in src/literate/HowTo/overlapcorrectedLDA_options.md:53-62
```@example overlapcorrectedLDA_options
ldaModel = LDA(method=:whiten,cov_w=SimpleCovariance(),cov_b=SimpleCovariance(),regcoef=1e-3)
uf_lda = fit(UnfoldDecodingModel,des,evt,dat,ldaModel,"eventA"=>:condition;
nfolds=2,# only 2 folds to speed up computation
UnfoldFitkwargs=(;solver=customsolver), #customer solver for fun
eventcolumn=:event, # actually the default, but maybe your event dataframe has a different name?
multithreading = false) # who needs speed anyway :shrug:
plot_erp(coeftable(uf_lda))
```
exception =
MethodError: no method matching Union{Missing, Float64}(::Bool)
Stacktrace:
[1] Matrix{Union{Missing, Float64}}(s::LinearAlgebra.UniformScaling{Bool}, dims::Tuple{Int64, Int64})
@ LinearAlgebra /opt/hostedtoolcache/julia/1.10.0/x64/share/julia/stdlib/v1.10/LinearAlgebra/src/uniformscaling.jl:408
[2] Matrix{Union{Missing, Float64}}(s::LinearAlgebra.UniformScaling{Bool}, m::Int64, n::Int64)
@ LinearAlgebra /opt/hostedtoolcache/julia/1.10.0/x64/share/julia/stdlib/v1.10/LinearAlgebra/src/uniformscaling.jl:414
[3] inv!(A::LinearAlgebra.LU{Union{Missing, Float64}, Matrix{Union{Missing, Float64}}, Vector{Int64}})
@ LinearAlgebra /opt/hostedtoolcache/julia/1.10.0/x64/share/julia/stdlib/v1.10/LinearAlgebra/src/lu.jl:491
[4] inv(A::Matrix{Union{Missing, Float64}})
@ LinearAlgebra /opt/hostedtoolcache/julia/1.10.0/x64/share/julia/stdlib/v1.10/LinearAlgebra/src/dense.jl:917
[5] calculate_stderror(Xdc::SparseArrays.SparseMatrixCSC{Union{Missing, Float64}, Int64}, data::Matrix{Float64}, beta::Matrix{Float64})
@ Unfold ~/.julia/packages/Unfold/3KeNp/src/solver.jl:49
[6] solver_default(X::SparseArrays.SparseMatrixCSC{Union{Missing, Float64}, Int64}, data::Matrix{Float64}; stderror::Bool, multithreading::Bool, showprogress::Bool)
@ Unfold ~/.julia/packages/Unfold/3KeNp/src/solver.jl:28
[7] solver_default
@ Unfold ~/.julia/packages/Unfold/3KeNp/src/solver.jl:2 [inlined]
[8] (::Main.__atexample__named__overlapcorrectedLDA_options.var"#1#2")(x::SparseArrays.SparseMatrixCSC{Union{Missing, Float64}, Int64}, y::Matrix{Float64})
@ Main.__atexample__named__overlapcorrectedLDA_options ./overlapcorrectedLDA_options.md:39
[9] fit!(uf::Unfold.UnfoldLinearModelContinuousTime, data::Matrix{Float64}; solver::Main.__atexample__named__overlapcorrectedLDA_options.var"#1#2", kwargs::@kwargs{eventcolumn::Symbol})
@ Unfold ~/.julia/packages/Unfold/3KeNp/src/fit.jl:218
[10] fit!
@ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:169 [inlined]
[11] #fit#25
@ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:73 [inlined]
[12] fit
@ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:64 [inlined]
[13] fit(UnfoldModelType::Type{Unfold.UnfoldLinearModelContinuousTime}, design::Dict{String, Tuple{StatsModels.FormulaTerm{StatsModels.ConstantTerm{Int64}}, Unfold.FIRBasis}}, tbl::DataFrames.DataFrame, data::Matrix{Float64}; kwargs::@kwargs{eventcolumn::Symbol, solver::Main.__atexample__named__overlapcorrectedLDA_options.var"#1#2"})
@ Unfold ~/.julia/packages/Unfold/3KeNp/src/fit.jl:60
[14] fit
@ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:53 [inlined]
[15] macro expansion
@ ~/work/UnfoldDecode.jl/UnfoldDecode.jl/src/fit.jl:33 [inlined]
[16] macro expansion
@ ~/.julia/packages/Unfold/3KeNp/src/utilities.jl:171 [inlined]
[17] fit(UnfoldDecodingModel::Type{UnfoldDecodingModel}, design::Dict{String, Tuple{StatsModels.FormulaTerm{StatsModels.ConstantTerm{Int64}}, Unfold.FIRBasis}}, tbl::DataFrames.DataFrame, dat::Matrix{Float64}, model::MLJMultivariateStatsInterface.LDA, target::Pair{String, Symbol}; nfolds::Int64, eventcolumn::Symbol, UnfoldFitkwargs::@NamedTuple{solver::Main.__atexample__named__overlapcorrectedLDA_options.var"#1#2"}, multithreading::Bool)
@ UnfoldDecode ~/work/UnfoldDecode.jl/Unfo
|
Documentation:
../../../.julia/packages/Documenter/1HwWe/src/utilities/utilities.jl#L44
failed to run `@example` block in src/literate/tutorials/overlapcorrectedLDA.md:45-50
```@example overlapcorrectedLDA
using MLJ, MultivariateStats, MLJMultivariateStatsInterface
LDA = @load LDA pkg=MultivariateStats
uf_lda = fit(UnfoldDecodingModel,des,evt,dat,LDA(),Any=>:condition;nfolds=2) # 2 folds to speed up computation
plot_erp(coeftable(uf_lda))
```
exception =
TaskFailedException
nested task error: MethodError: no method matching (::Colon)(::Int64, ::Tuple{Int64, Int64})
Closest candidates are:
(::Colon)(::A, ::Any, !Matched::C) where {A<:Real, C<:Unitful.Quantity}
@ Unitful ~/.julia/packages/Unitful/R4J37/src/range.jl:86
(::Colon)(::T, ::Any, !Matched::T) where T<:Real
@ Base range.jl:50
(::Colon)(::A, ::Any, !Matched::C) where {A<:Real, C<:Real}
@ Base range.jl:10
...
Stacktrace:
[1] macro expansion
@ ~/work/UnfoldDecode.jl/UnfoldDecode.jl/src/fit.jl:43 [inlined]
[2] (::UnfoldDecode.var"#10#threadsfor_fun#5"{UnfoldDecode.var"#10#threadsfor_fun#4#6"{Symbol, @NamedTuple{}, Dict{DataType, Tuple{StatsModels.FormulaTerm{StatsModels.ConstantTerm{Int64}, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term}}, Unfold.FIRBasis}}, DataFrames.DataFrame, Matrix{Float64}, MLJMultivariateStatsInterface.LDA, Pair{DataType, Symbol}, Vector{UnfoldDecode.DecodingFit}, Vector{Tuple{Vector{Int64}, UnitRange{Int64}}}, UnitRange{Int64}}})(tid::Int64; onethread::Bool)
@ UnfoldDecode ./threadingconstructs.jl:214
[3] #10#threadsfor_fun
@ UnfoldDecode ./threadingconstructs.jl:181 [inlined]
[4] (::Base.Threads.var"#1#2"{UnfoldDecode.var"#10#threadsfor_fun#5"{UnfoldDecode.var"#10#threadsfor_fun#4#6"{Symbol, @NamedTuple{}, Dict{DataType, Tuple{StatsModels.FormulaTerm{StatsModels.ConstantTerm{Int64}, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term}}, Unfold.FIRBasis}}, DataFrames.DataFrame, Matrix{Float64}, MLJMultivariateStatsInterface.LDA, Pair{DataType, Symbol}, Vector{UnfoldDecode.DecodingFit}, Vector{Tuple{Vector{Int64}, UnitRange{Int64}}}, UnitRange{Int64}}}, Int64})()
@ Base.Threads ./threadingconstructs.jl:153
Stacktrace:
[1] threading_run(fun::UnfoldDecode.var"#10#threadsfor_fun#5"{UnfoldDecode.var"#10#threadsfor_fun#4#6"{Symbol, @NamedTuple{}, Dict{DataType, Tuple{StatsModels.FormulaTerm{StatsModels.ConstantTerm{Int64}, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term}}, Unfold.FIRBasis}}, DataFrames.DataFrame, Matrix{Float64}, MLJMultivariateStatsInterface.LDA, Pair{DataType, Symbol}, Vector{UnfoldDecode.DecodingFit}, Vector{Tuple{Vector{Int64}, UnitRange{Int64}}}, UnitRange{Int64}}}, static::Bool)
@ Base.Threads ./threadingconstructs.jl:171
[2] macro expansion
@ ./threadingconstructs.jl:219 [inlined]
[3] macro expansion
@ ~/.julia/packages/Unfold/3KeNp/src/utilities.jl:169 [inlined]
[4] fit(UnfoldDecodingModel::Type{UnfoldDecodingModel}, design::Dict{DataType, Tuple{StatsModels.FormulaTerm{StatsModels.ConstantTerm{Int64}, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term}}, Unfold.FIRBasis}}, tbl::DataFrames.DataFrame, dat::Matrix{Float64}, model::MLJMultivariateStatsInterface.LDA, target::Pair{DataType, Symbol}; nfolds::Int64, eventcolumn::Symbol, UnfoldFitkwargs::@NamedTuple{}, multithreading::Bool)
@ UnfoldDecode ~/work/UnfoldDecode.jl/UnfoldDecode.jl/src/fit.jl:26
[5] top-level scope
@ overlapcorrectedLDA.md:48
[6] eval
@ ./boot.jl:385 [inlined]
[7] #58
@ ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:754 [inlined]
[8] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[9] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:753
[10] (::IOCapture.var"#4#7"{DataType,
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Documentation
Process completed with exit code 1.
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