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Triggered via push January 17, 2024 08:39
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6 errors
Documentation: docs/experimental.jl#L321
Hint-handler #41 for MethodError in ImageCore caused an error
Documentation: ../../../.julia/packages/Documenter/1HwWe/src/utilities/utilities.jl#L44
failed to run `@example` block in src/literate/HowTo/overlapcorrectedLDA_options.md:38-42 ```@example overlapcorrectedLDA_options customsolver = (x,y)->Unfold.solver_default(x,y;stderror=true) uf = Unfold.fit(UnfoldModel,des,evt,dat[1,:];solver=customsolver); plot_erp(coeftable(uf)) ``` exception = MethodError: no method matching Union{Missing, Float64}(::Bool) Stacktrace: [1] Matrix{Union{Missing, Float64}}(s::LinearAlgebra.UniformScaling{Bool}, dims::Tuple{Int64, Int64}) @ LinearAlgebra /opt/hostedtoolcache/julia/1.10.0/x64/share/julia/stdlib/v1.10/LinearAlgebra/src/uniformscaling.jl:408 [2] Matrix{Union{Missing, Float64}}(s::LinearAlgebra.UniformScaling{Bool}, m::Int64, n::Int64) @ LinearAlgebra /opt/hostedtoolcache/julia/1.10.0/x64/share/julia/stdlib/v1.10/LinearAlgebra/src/uniformscaling.jl:414 [3] inv!(A::LinearAlgebra.LU{Union{Missing, Float64}, Matrix{Union{Missing, Float64}}, Vector{Int64}}) @ LinearAlgebra /opt/hostedtoolcache/julia/1.10.0/x64/share/julia/stdlib/v1.10/LinearAlgebra/src/lu.jl:491 [4] inv(A::Matrix{Union{Missing, Float64}}) @ LinearAlgebra /opt/hostedtoolcache/julia/1.10.0/x64/share/julia/stdlib/v1.10/LinearAlgebra/src/dense.jl:917 [5] calculate_stderror(Xdc::SparseArrays.SparseMatrixCSC{Union{Missing, Float64}, Int64}, data::Matrix{Float64}, beta::Matrix{Float64}) @ Unfold ~/.julia/packages/Unfold/3KeNp/src/solver.jl:49 [6] solver_default(X::SparseArrays.SparseMatrixCSC{Union{Missing, Float64}, Int64}, data::Matrix{Float64}; stderror::Bool, multithreading::Bool, showprogress::Bool) @ Unfold ~/.julia/packages/Unfold/3KeNp/src/solver.jl:28 [7] solver_default @ Unfold ~/.julia/packages/Unfold/3KeNp/src/solver.jl:2 [inlined] [8] (::Main.__atexample__named__overlapcorrectedLDA_options.var"#1#2")(x::SparseArrays.SparseMatrixCSC{Union{Missing, Float64}, Int64}, y::Matrix{Float64}) @ Main.__atexample__named__overlapcorrectedLDA_options ./overlapcorrectedLDA_options.md:39 [9] fit!(uf::Unfold.UnfoldLinearModelContinuousTime, data::Matrix{Float64}; solver::Main.__atexample__named__overlapcorrectedLDA_options.var"#1#2", kwargs::@kwargs{}) @ Unfold ~/.julia/packages/Unfold/3KeNp/src/fit.jl:218 [10] fit! @ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:169 [inlined] [11] #fit#25 @ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:73 [inlined] [12] fit @ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:64 [inlined] [13] fit(::Unfold.UnfoldLinearModelContinuousTime, ::Dict{String, Tuple{StatsModels.FormulaTerm{StatsModels.ConstantTerm{Int64}}, Unfold.FIRBasis}}, ::DataFrames.DataFrame, ::Vector{Float64}; kwargs::@kwargs{solver::Main.__atexample__named__overlapcorrectedLDA_options.var"#1#2"}) @ Unfold ~/.julia/packages/Unfold/3KeNp/src/fit.jl:150 [14] fit @ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:140 [inlined] [15] #fit#24 @ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:60 [inlined] [16] fit @ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:53 [inlined] [17] fit(UnfoldModelType::Type{Unfold.UnfoldModel}, design::Dict{String, Tuple{StatsModels.FormulaTerm{StatsModels.ConstantTerm{Int64}}, Unfold.FIRBasis}}, tbl::DataFrames.DataFrame, data::Vector{Float64}; kwargs::@kwargs{solver::Main.__atexample__named__overlapcorrectedLDA_options.var"#1#2"}) @ Unfold ~/.julia/packages/Unfold/3KeNp/src/fit.jl:49 [18] top-level scope @ overlapcorrectedLDA_options.md:39 [19] eval @ ./boot.jl:385 [inlined] [20] #58 @ ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:754 [inlined] [21] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [22] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:753 [23] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{B
Documentation: docs/experimental.jl#L321
Hint-handler #41 for MethodError in ImageCore caused an error
Documentation: ../../../.julia/packages/Documenter/1HwWe/src/utilities/utilities.jl#L44
failed to run `@example` block in src/literate/HowTo/overlapcorrectedLDA_options.md:53-62 ```@example overlapcorrectedLDA_options ldaModel = LDA(method=:whiten,cov_w=SimpleCovariance(),cov_b=SimpleCovariance(),regcoef=1e-3) uf_lda = fit(UnfoldDecodingModel,des,evt,dat,ldaModel,"eventA"=>:condition; nfolds=2,# only 2 folds to speed up computation UnfoldFitkwargs=(;solver=customsolver), #customer solver for fun eventcolumn=:event, # actually the default, but maybe your event dataframe has a different name? multithreading = false) # who needs speed anyway :shrug: plot_erp(coeftable(uf_lda)) ``` exception = MethodError: no method matching Union{Missing, Float64}(::Bool) Stacktrace: [1] Matrix{Union{Missing, Float64}}(s::LinearAlgebra.UniformScaling{Bool}, dims::Tuple{Int64, Int64}) @ LinearAlgebra /opt/hostedtoolcache/julia/1.10.0/x64/share/julia/stdlib/v1.10/LinearAlgebra/src/uniformscaling.jl:408 [2] Matrix{Union{Missing, Float64}}(s::LinearAlgebra.UniformScaling{Bool}, m::Int64, n::Int64) @ LinearAlgebra /opt/hostedtoolcache/julia/1.10.0/x64/share/julia/stdlib/v1.10/LinearAlgebra/src/uniformscaling.jl:414 [3] inv!(A::LinearAlgebra.LU{Union{Missing, Float64}, Matrix{Union{Missing, Float64}}, Vector{Int64}}) @ LinearAlgebra /opt/hostedtoolcache/julia/1.10.0/x64/share/julia/stdlib/v1.10/LinearAlgebra/src/lu.jl:491 [4] inv(A::Matrix{Union{Missing, Float64}}) @ LinearAlgebra /opt/hostedtoolcache/julia/1.10.0/x64/share/julia/stdlib/v1.10/LinearAlgebra/src/dense.jl:917 [5] calculate_stderror(Xdc::SparseArrays.SparseMatrixCSC{Union{Missing, Float64}, Int64}, data::Matrix{Float64}, beta::Matrix{Float64}) @ Unfold ~/.julia/packages/Unfold/3KeNp/src/solver.jl:49 [6] solver_default(X::SparseArrays.SparseMatrixCSC{Union{Missing, Float64}, Int64}, data::Matrix{Float64}; stderror::Bool, multithreading::Bool, showprogress::Bool) @ Unfold ~/.julia/packages/Unfold/3KeNp/src/solver.jl:28 [7] solver_default @ Unfold ~/.julia/packages/Unfold/3KeNp/src/solver.jl:2 [inlined] [8] (::Main.__atexample__named__overlapcorrectedLDA_options.var"#1#2")(x::SparseArrays.SparseMatrixCSC{Union{Missing, Float64}, Int64}, y::Matrix{Float64}) @ Main.__atexample__named__overlapcorrectedLDA_options ./overlapcorrectedLDA_options.md:39 [9] fit!(uf::Unfold.UnfoldLinearModelContinuousTime, data::Matrix{Float64}; solver::Main.__atexample__named__overlapcorrectedLDA_options.var"#1#2", kwargs::@kwargs{eventcolumn::Symbol}) @ Unfold ~/.julia/packages/Unfold/3KeNp/src/fit.jl:218 [10] fit! @ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:169 [inlined] [11] #fit#25 @ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:73 [inlined] [12] fit @ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:64 [inlined] [13] fit(UnfoldModelType::Type{Unfold.UnfoldLinearModelContinuousTime}, design::Dict{String, Tuple{StatsModels.FormulaTerm{StatsModels.ConstantTerm{Int64}}, Unfold.FIRBasis}}, tbl::DataFrames.DataFrame, data::Matrix{Float64}; kwargs::@kwargs{eventcolumn::Symbol, solver::Main.__atexample__named__overlapcorrectedLDA_options.var"#1#2"}) @ Unfold ~/.julia/packages/Unfold/3KeNp/src/fit.jl:60 [14] fit @ ~/.julia/packages/Unfold/3KeNp/src/fit.jl:53 [inlined] [15] macro expansion @ ~/work/UnfoldDecode.jl/UnfoldDecode.jl/src/fit.jl:33 [inlined] [16] macro expansion @ ~/.julia/packages/Unfold/3KeNp/src/utilities.jl:171 [inlined] [17] fit(UnfoldDecodingModel::Type{UnfoldDecodingModel}, design::Dict{String, Tuple{StatsModels.FormulaTerm{StatsModels.ConstantTerm{Int64}}, Unfold.FIRBasis}}, tbl::DataFrames.DataFrame, dat::Matrix{Float64}, model::MLJMultivariateStatsInterface.LDA, target::Pair{String, Symbol}; nfolds::Int64, eventcolumn::Symbol, UnfoldFitkwargs::@NamedTuple{solver::Main.__atexample__named__overlapcorrectedLDA_options.var"#1#2"}, multithreading::Bool) @ UnfoldDecode ~/work/UnfoldDecode.jl/Unfo
Documentation: ../../../.julia/packages/Documenter/1HwWe/src/utilities/utilities.jl#L44
failed to run `@example` block in src/literate/tutorials/overlapcorrectedLDA.md:45-50 ```@example overlapcorrectedLDA using MLJ, MultivariateStats, MLJMultivariateStatsInterface LDA = @load LDA pkg=MultivariateStats uf_lda = fit(UnfoldDecodingModel,des,evt,dat,LDA(),Any=>:condition;nfolds=2) # 2 folds to speed up computation plot_erp(coeftable(uf_lda)) ``` exception = TaskFailedException nested task error: MethodError: no method matching (::Colon)(::Int64, ::Tuple{Int64, Int64}) Closest candidates are: (::Colon)(::A, ::Any, !Matched::C) where {A<:Real, C<:Unitful.Quantity} @ Unitful ~/.julia/packages/Unitful/R4J37/src/range.jl:86 (::Colon)(::T, ::Any, !Matched::T) where T<:Real @ Base range.jl:50 (::Colon)(::A, ::Any, !Matched::C) where {A<:Real, C<:Real} @ Base range.jl:10 ... Stacktrace: [1] macro expansion @ ~/work/UnfoldDecode.jl/UnfoldDecode.jl/src/fit.jl:43 [inlined] [2] (::UnfoldDecode.var"#10#threadsfor_fun#5"{UnfoldDecode.var"#10#threadsfor_fun#4#6"{Symbol, @NamedTuple{}, Dict{DataType, Tuple{StatsModels.FormulaTerm{StatsModels.ConstantTerm{Int64}, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term}}, Unfold.FIRBasis}}, DataFrames.DataFrame, Matrix{Float64}, MLJMultivariateStatsInterface.LDA, Pair{DataType, Symbol}, Vector{UnfoldDecode.DecodingFit}, Vector{Tuple{Vector{Int64}, UnitRange{Int64}}}, UnitRange{Int64}}})(tid::Int64; onethread::Bool) @ UnfoldDecode ./threadingconstructs.jl:214 [3] #10#threadsfor_fun @ UnfoldDecode ./threadingconstructs.jl:181 [inlined] [4] (::Base.Threads.var"#1#2"{UnfoldDecode.var"#10#threadsfor_fun#5"{UnfoldDecode.var"#10#threadsfor_fun#4#6"{Symbol, @NamedTuple{}, Dict{DataType, Tuple{StatsModels.FormulaTerm{StatsModels.ConstantTerm{Int64}, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term}}, Unfold.FIRBasis}}, DataFrames.DataFrame, Matrix{Float64}, MLJMultivariateStatsInterface.LDA, Pair{DataType, Symbol}, Vector{UnfoldDecode.DecodingFit}, Vector{Tuple{Vector{Int64}, UnitRange{Int64}}}, UnitRange{Int64}}}, Int64})() @ Base.Threads ./threadingconstructs.jl:153 Stacktrace: [1] threading_run(fun::UnfoldDecode.var"#10#threadsfor_fun#5"{UnfoldDecode.var"#10#threadsfor_fun#4#6"{Symbol, @NamedTuple{}, Dict{DataType, Tuple{StatsModels.FormulaTerm{StatsModels.ConstantTerm{Int64}, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term}}, Unfold.FIRBasis}}, DataFrames.DataFrame, Matrix{Float64}, MLJMultivariateStatsInterface.LDA, Pair{DataType, Symbol}, Vector{UnfoldDecode.DecodingFit}, Vector{Tuple{Vector{Int64}, UnitRange{Int64}}}, UnitRange{Int64}}}, static::Bool) @ Base.Threads ./threadingconstructs.jl:171 [2] macro expansion @ ./threadingconstructs.jl:219 [inlined] [3] macro expansion @ ~/.julia/packages/Unfold/3KeNp/src/utilities.jl:169 [inlined] [4] fit(UnfoldDecodingModel::Type{UnfoldDecodingModel}, design::Dict{DataType, Tuple{StatsModels.FormulaTerm{StatsModels.ConstantTerm{Int64}, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term}}, Unfold.FIRBasis}}, tbl::DataFrames.DataFrame, dat::Matrix{Float64}, model::MLJMultivariateStatsInterface.LDA, target::Pair{DataType, Symbol}; nfolds::Int64, eventcolumn::Symbol, UnfoldFitkwargs::@NamedTuple{}, multithreading::Bool) @ UnfoldDecode ~/work/UnfoldDecode.jl/UnfoldDecode.jl/src/fit.jl:26 [5] top-level scope @ overlapcorrectedLDA.md:48 [6] eval @ ./boot.jl:385 [inlined] [7] #58 @ ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:754 [inlined] [8] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [9] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:753 [10] (::IOCapture.var"#4#7"{DataType,
Documentation
Process completed with exit code 1.