Misc NRL bugfixes

[grantfirl]

PR Checklist

• This PR is up-to-date with the top of all sub-component repositories except for those sub-components which are the subject of this PR. Please consult the ufs-weather-model wiki if you are unsure how to do this.

• This PR has been tested using a branch which is up-to-date with the top of all sub-component repositories except for those sub-components which are the subject of this PR

• An Issue describing the work contained in this PR has been created either in the subcomponent(s) or in the ufs-weather-model. The Issue should be created in the repository that is most relevant to the changes in contained in the PR. The Issue and the dependent sub-component PR
  are specified below.

• Results for one or more of the regression tests change and the reasons for the changes are understood and explained below.

• New or updated input data is required by this PR. If checked, please work with the code managers to update input data sets on all platforms.

Description

See the descriptions in NCAR/ccpp-physics#954 and NOAA-EMC/fv3atm#576 for details.

Issue(s) addressed

NCAR/ccpp-physics#955

Testing

See NOAA-EMC/fv3atm#576 for testing details.

• hera.intel
• hera.gnu
• orion.intel
• cheyenne.intel
• cheyenne.gnu
• gaea.intel
• jet.intel
• wcoss2.intel
• acorn.intel
• opnReqTest for newly added/changed feature
• CI

Dependencies

NOAA-EMC/fv3atm#576
NCAR/ccpp-physics#954

[jkbk2004]

@grantfirl sorry for delaying. we will merge in #1399 around lunch time today. and then we can start working on this PR.

[jkbk2004]

@grantfirl can you sync up branch? and then I will add new BL_DATE. we can start working on this pr.

[grantfirl]

@grantfirl can you sync up branch? and then I will add new BL_DATE. we can start working on this pr.

OK @jkbk2004 This PR and all submodule PRs have been updated/synced with the latest develop/main branches after the AQM merge.

[BrianCurtis-NOAA]

Automated RT Failure Notification
Machine: orion
Compiler: intel
Job: BL
[BL] Repo location: /work/noaa/nems/emc.nemspara/autort/pr/1035943918/20220909193022/ufs-weather-model
[BL] Error: Test compile_017 failed in run_compile failed
[BL] Error: Test compile_018 failed in run_compile failed
Please make changes and add the following label back: orion-intel-BL

[BrianCurtis-NOAA]

Automated RT Failure Notification
Machine: gaea
Compiler: intel
Job: BL
[BL] Repo location: /lustre/f2/pdata/ncep/emc.nemspara/autort/pr/1035943918/20220910003007/ufs-weather-model
[BL] Error: Test hafs_global_storm_following_1nest_atm 092 failed in run_test failed
Please make changes and add the following label back: gaea-intel-BL

[BrianCurtis-NOAA]

@jkbk2004 Could you start adding comments with reasons for failure seen on machines (orion & gaea in this case). It would be good to know and keep track of.

[jkbk2004]

gaea failure was "Slurm unknown status": it ran ok with re-submission. On orion, it seems there is a git issue: HYCOM: manually ran. Following up with help desk.

[jkbk2004]

@grantfirl all tests are done. we can start merging in dependencies: ccpp first.

[grantfirl]

@jkbk2004 ccpp-physics has been merged and the fv3atm PR branch has been updated.

[jkbk2004]

@grantfirl we can merge in after updating fv3 pointer and reverting branch in gitmodules.

[grantfirl]

@jkbk2004 OK, should be good to go now.

[BrianCurtis-NOAA]

Just noting that tests also passed on Acorn.