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HAFS moving-nesting related developments #1104

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3cb2009
Merge branch 'support/HAFS' into feature/hafs_moving_nest
BinLiu-NOAA Apr 5, 2021
4969f62
Update submodule FV3.
BinLiu-NOAA Apr 6, 2021
96442b2
Update submodule FMS and FV3.
BinLiu-NOAA Apr 12, 2021
a191a51
Prepare WW3 build
danrosen25 Apr 13, 2021
ebe832e
Merge remote-tracking branch 'upstream/develop' into support/HAFS
BinLiu-NOAA Apr 16, 2021
8652f06
Update submodule FV3.
BinLiu-NOAA Apr 16, 2021
e879efe
Remove the obsolete symbolic links under modulefiles.
BinLiu-NOAA Apr 16, 2021
e417d1b
Update submodule FV3.
BinLiu-NOAA Apr 16, 2021
fc5a6cb
Merge remote-tracking branch 'remotes/origin/develop' into support/HAFS
BinLiu-NOAA Apr 16, 2021
1b3cb93
Update submodule FV3.
BinLiu-NOAA Apr 16, 2021
866b89f
Update submodules of FV3 and CMEPS. Create modulefile symbolic links …
BinLiu-NOAA Apr 17, 2021
6a12cf9
Update submodule FV3.
BinLiu-NOAA Apr 17, 2021
ba80521
Revert changes in modulefiles/ufs_wcoss_cray*, since the esmf810bs47 …
BinLiu-NOAA Apr 18, 2021
8379159
Use the correct location to load esmf/810bs47 on wcoss_cray. Also,
BinLiu-NOAA Apr 20, 2021
7e63c67
Update submodule FV3.
BinLiu-NOAA Apr 20, 2021
0634d17
Update submodule FV3.
BinLiu-NOAA Apr 20, 2021
3b3a0b7
Use a temporarily installed version of esmf/811bs03 on Orion, Hera, J…
BinLiu-NOAA Apr 24, 2021
d374729
Switch to use esmf/811 as it has been installed under hpc-stack.
BinLiu-NOAA Apr 30, 2021
07b9608
Merge remote-tracking branch 'remotes/upstream/develop' into support/…
BinLiu-NOAA May 12, 2021
7d18241
Update FV3, which has a better fix to deal with sea ice point for HAFS
BinLiu-NOAA May 19, 2021
5c70d5e
update git submodules
May 20, 2021
0a79744
update components
May 21, 2021
79f9fc8
update CMEPS
May 25, 2021
1bf594c
sync model
May 25, 2021
a8b2659
sync model again
May 25, 2021
51c02e4
fix merge conflict issue
May 25, 2021
8c670b2
resolve merge conflicts
May 25, 2021
78b282a
update FV3
May 26, 2021
e02825b
update mediator component
May 26, 2021
8613d7a
Update submodule FV3, which has the parameter variables rlmx and elmx…
BinLiu-NOAA May 26, 2021
09391fd
Merge remote-tracking branch 'remotes/origin/support/HAFS' into featu…
BinLiu-NOAA May 27, 2021
845c9ec
update components and sync with support/HAFS
Jun 10, 2021
41b5242
Merge remote-tracking branch 'origin/support/HAFS' into feature/hafs_…
Jun 10, 2021
94628f2
revert chnages in the CDEPS interface
Jun 10, 2021
4aa9759
revert chnages related with using full CDEPS library and add data oce…
Jun 10, 2021
30f41ff
Update submodule HYCOM.
BinLiu-NOAA Jun 12, 2021
4179b7d
update components, point HAFS fork for CDEPS and fix build issue in NEMS
Jun 15, 2021
2aaf95a
fix for nems data atmosphere
Jun 15, 2021
e7f44ac
Update submodule FV3 after WeiguoWang-NOAA's modification of near-sur…
BinLiu-NOAA Jun 15, 2021
43bc629
update FV3 and HYCOM
uturuncoglu Jun 16, 2021
d452519
fix HAFS specific regression tests
Jun 21, 2021
de80745
point feature/hafs_couplehycom_cdeps branch for submodules
Jun 21, 2021
f684c94
Merge remote-tracking branch 'remotes/origin/support/HAFS' into featu…
BinLiu-NOAA Jun 21, 2021
7c478cd
fix run script to copy table files to run directory correctly
Jun 21, 2021
7369779
more fix for RT system
Jun 22, 2021
41518bf
activate all HAFS specific RTs
Jun 22, 2021
3c97b19
update HAFS RTs
Jun 23, 2021
450dfc6
update defaults for RTs
Jun 23, 2021
1da5ad7
add HAFS specific RTs to rt.conf
Jun 23, 2021
ecf5cda
Merge remote-tracking branch 'remotes/upstream/develop' into feature/…
BinLiu-NOAA Jul 9, 2021
e5cb32e
Merge remote-tracking branch 'remotes/upstream/develop' into feature/…
BinLiu-NOAA Jul 13, 2021
927ce2a
Merge remote-tracking branch 'remotes/origin/support/HAFS' into featu…
BinLiu-NOAA Jul 14, 2021
a7e4ea0
Merge remote-tracking branch 'remotes/origin/support/HAFS' into featu…
BinLiu-NOAA Jul 16, 2021
0db5123
adjust HAFS RTs based on recent chnages in FV3 configuration and gene…
Jul 16, 2021
ca9d544
update baseline files that need to be checked
Jul 16, 2021
5a6f370
update standalone test for its lits of baseline files
Jul 16, 2021
92e54d1
Merge remote-tracking branch 'upstream/develop' into feature/hafs_syn…
BinLiu-NOAA Jul 17, 2021
3fa0db6
Merge remote-tracking branch 'remotes/origin/feature/hafs_sync_202107…
BinLiu-NOAA Jul 17, 2021
007e62e
remove ncld from HAFS RTs
Jul 19, 2021
e91f465
Merge remote-tracking branch 'remotes/origin/feature/hafs_sync_202107…
BinLiu-NOAA Jul 19, 2021
bb403ef
Update submodules CDEPS and CMEPS to the latest support/HAFS branches.
BinLiu-NOAA Jul 19, 2021
660b1aa
Merge remote-tracking branch 'remotes/origin/feature/hafs_sync_202107…
BinLiu-NOAA Jul 19, 2021
a97f9d7
Update submodule FV3.
BinLiu-NOAA Jul 19, 2021
4710632
Update submodule CMEPS-interface/CMEPS.
BinLiu-NOAA Jul 20, 2021
f7ab203
fix field dictionary and CMEPS HAFS coupling mode for wave coupling
Jul 20, 2021
ffc84da
add missing field to the dictionary
Jul 20, 2021
b7fd00e
Update submodule CMEPS-interface/CMEPS.
BinLiu-NOAA Jul 25, 2021
6e3fb35
Merge remote-tracking branch 'remotes/upstream/develop' into support/…
BinLiu-NOAA Jul 25, 2021
ff815bc
Remove the symbolic modulefile links previously added.
BinLiu-NOAA Jul 27, 2021
0f4ffa0
Update submodule CDEPS-interface/CDEPS, the support/HAFS branch is now
BinLiu-NOAA Jul 28, 2021
0eec6a3
Switch to use the emc/develop branch in NOAA-EMC fork for the HYCOM-s…
BinLiu-NOAA Jul 28, 2021
b72f5b0
Update submodule CMEPS-interface/CMEPS.
BinLiu-NOAA Jul 28, 2021
f2716ef
Update submodule WW3.
BinLiu-NOAA Jul 28, 2021
15a8f91
Update submodules to point the proper branches and commits.
BinLiu-NOAA Jul 28, 2021
50b1ad9
Update submodule WW3.
BinLiu-NOAA Jul 29, 2021
9784846
Update submodule CMEPS-interface/CMEPS.
BinLiu-NOAA Jul 29, 2021
942e233
Remove PNETCDF dependency since it is not currently used in ufs-weath…
BinLiu-NOAA Jul 30, 2021
32dd969
Build one HAFS application to support different HAFS related configur…
BinLiu-NOAA Jul 30, 2021
15b3608
Merge remote-tracking branch 'remotes/upstream/develop' into feature/…
BinLiu-NOAA Jul 30, 2021
1e185ce
Update submodule FV3.
BinLiu-NOAA Aug 1, 2021
7b0758a
Merge remote-tracking branch 'remotes/upstream/develop' into feature/…
BinLiu-NOAA Aug 2, 2021
bf258d1
update HAFS specific regression tests
Aug 3, 2021
71205c5
Merge branch 'feature/hafs_sync_202107' of https://github.com/hafs-co…
Aug 3, 2021
48c07de
*Remove amip_interp_nml from tests/parm/input_natl_c192.nml.IN and ma…
BinLiu-NOAA Aug 3, 2021
2649647
*Rename and clean up the HAFS related regression tests (Ufuk, Evan, C…
BinLiu-NOAA Aug 4, 2021
7c7b4f3
Update the export_hafs_* in tests/default_vars.sh and tests/tests/haf…
BinLiu-NOAA Aug 4, 2021
8040fec
Update new added HAFS regression tests and three HAFS build modes (HA…
BinLiu-NOAA Aug 4, 2021
45d7ade
Take out the FV3 restart files from the new added HAFS related RT bas…
BinLiu-NOAA Aug 4, 2021
c55ccbe
Update RegressionTests_orion.intel.log.
BinLiu-NOAA Aug 4, 2021
5b543f5
Update RegressionTests_hera.gnu.log.
BinLiu-NOAA Aug 4, 2021
87b4e0d
Merge branch 'feature/hafs_sync_202107' of https://github.com/hafs-co…
BinLiu-NOAA Aug 4, 2021
dbf131b
Regression tests on wcoss_cray passed. Update RegressionTests_wcoss_c…
BinLiu-NOAA Aug 4, 2021
1d98827
Update RegressionTests_gaea.intel.log and RegressionTests_cheyenne.gn…
BinLiu-NOAA Aug 4, 2021
449571d
Regression tests on wcoss_dell_p3 passed. Update RegressionTests_wcos…
BinLiu-NOAA Aug 4, 2021
c81a564
Update RegressionTests_hera.intel.log
BinLiu-NOAA Aug 4, 2021
b8502bd
Update RegressionTests_cheyenne.intel.log.
BinLiu-NOAA Aug 4, 2021
11b062e
Delete rt_hafs.conf and increase wallclock for RT hafs_regional_atm.
BinLiu-NOAA Aug 5, 2021
90e0e49
Update RegressionTests_jet.intel.log.
BinLiu-NOAA Aug 5, 2021
73a3bdd
Update submodule CDEPS-interface/CDEPS.
BinLiu-NOAA Aug 5, 2021
37ca720
Remove .git for urls in .gitmodules.
BinLiu-NOAA Aug 5, 2021
5bfb2d3
Remove empty trailing whitespaces for new added files/changes.
BinLiu-NOAA Aug 5, 2021
7e97205
Update submodule CMEPS-interface/CMEPS.
BinLiu-NOAA Aug 5, 2021
b041e63
Update submodule FV3.
BinLiu-NOAA Aug 5, 2021
c1e2e1d
Update .gitmodules and FV3.
BinLiu-NOAA Aug 5, 2021
e7a2ec6
Update submodule FV3, which added the cplocn2atm namelist option to t…
BinLiu-NOAA Aug 23, 2021
73d7b08
Update submodule FV3 and now the feature/hafs_vortex_tracking can bui…
BinLiu-NOAA Aug 28, 2021
0dab858
Update submodule feature/hafs_vortex_tracking.
BinLiu-NOAA Aug 31, 2021
7b72c07
Update submodule FV3.
BinLiu-NOAA Sep 10, 2021
4e8dee4
Merge remote-tracking branch 'remotes/upstream/develop' into support/…
BinLiu-NOAA Sep 10, 2021
6345844
Update submodule FV3.
BinLiu-NOAA Sep 17, 2021
c66a35d
Update submodule FV3.
BinLiu-NOAA Sep 17, 2021
8f73255
Update .gitmodules
DusanJovic-NOAA Sep 30, 2021
6e76382
Update submodule FV3.
BinLiu-NOAA Sep 30, 2021
082f000
Update FV3
DusanJovic-NOAA Sep 30, 2021
b0f4687
Update FV3
DusanJovic-NOAA Sep 30, 2021
f8e6e52
Update submodule FV3.
BinLiu-NOAA Oct 1, 2021
2c9c04a
Merge remote-tracking branch 'remotes/origin/support/HAFS' into featu…
BinLiu-NOAA Oct 1, 2021
309a409
Merge remote-tracking branch 'remotes/upstream/develop' into feature/…
BinLiu-NOAA Oct 1, 2021
67dbe84
Update submodule FV3 and update modulefiles/ufs_orion.intel and
BinLiu-NOAA Oct 6, 2021
08c5301
Update submodule FV3.
BinLiu-NOAA Oct 12, 2021
69f87b2
Update submodule FV3.
BinLiu-NOAA Oct 13, 2021
bdc00ca
Resolved merge issues with handling of albedo and lakes in moving nest.
wramstrom Oct 26, 2021
fd92bec
Added t-dependent lon-lat data to fv_diagnostics
Nov 2, 2021
d0dd7d9
Merge remote-tracking branch 'remotes/upstream/develop' into support/…
BinLiu-NOAA Nov 2, 2021
c8fe078
Update FV3
DusanJovic-NOAA Nov 3, 2021
5012817
Merge remote-tracking branch 'remotes/upstream/develop' into support/…
BinLiu-NOAA Nov 3, 2021
970f4a2
Merge remote-tracking branch 'remotes/upstream/develop' into support/…
BinLiu-NOAA Nov 4, 2021
4ba259c
Added moving nest functionality for neststruct%i/j stagger.
wramstrom Nov 17, 2021
1ee854a
Merge branch 'support/HAFS' into feature/hafs_nesting
BinLiu-NOAA Nov 19, 2021
6126b0a
Merge remote-tracking branch 'remotes/upstream/develop' into feature/…
BinLiu-NOAA Nov 20, 2021
cb55c32
Added preliminary land masked interpolation for moving nest.
wramstrom Dec 3, 2021
0ec289d
Use a temporary installed fms/2021.03.02 on Hera needed by HAFS movin…
BinLiu-NOAA Dec 3, 2021
558cd4d
update submodule FV3.
Dec 14, 2021
9bbdc8d
Regional Moving Nest Enabled. Fixed moving nest for land emissivity a…
wramstrom Dec 14, 2021
868347b
Merge commit 'b52f83cfdff49d98cbc3c2f6074ffde288bb5327' into feature/…
BinLiu-NOAA Dec 15, 2021
987a53a
Moving Nest updates for emis_lnd and emis_wat.
wramstrom Dec 17, 2021
d14823f
Merge remote-tracking branch 'origin/develop' into multiple_output_grids
DusanJovic-NOAA Jan 4, 2022
6891cbe
Update submodule FV3.
BinLiu-NOAA Jan 5, 2022
f91801c
Update FV3
DusanJovic-NOAA Jan 5, 2022
f64869f
Merge remote-tracking branch 'origin/develop' into multiple_output_grids
DusanJovic-NOAA Jan 27, 2022
ad39c26
Merge commit '4604d7073b83790bbb2995d5b1d0477931289fbe' into feature/…
BinLiu-NOAA Jan 29, 2022
60dfaa4
Added patch for nest motion of surface emissivity and albedo.
wramstrom Jan 30, 2022
68446fd
Added patch for surface emissivity for moving nest.
wramstrom Jan 30, 2022
44d2457
Merge branch 'feature/hafs_nesting' of https://github.com/hafs-commun…
BinLiu-NOAA Jan 31, 2022
2f18d37
Update submodule FV3.
BinLiu-NOAA Jan 31, 2022
e1acfc2
Merge remote-tracking branch 'origin/develop' into multiple_output_grids
DusanJovic-NOAA Feb 2, 2022
b2fad82
Update esmf to version 8.2.1b04
DusanJovic-NOAA Feb 2, 2022
36d636d
Merge remote-tracking branch 'remotes/DJ/multiple_output_grids' into …
BinLiu-NOAA Feb 3, 2022
3162b59
Merge remote-tracking branch 'DJ/multiple_output_grids' into feature/…
BinLiu-NOAA Feb 3, 2022
50f7e50
Use fms/2021.04 and esmf/8_2_1_beta_snapshot_04 on Orion and Hera.
BinLiu-NOAA Feb 3, 2022
aa5e040
*Update existing HAFS RTs to work with the new capability in write grid
BinLiu-NOAA Feb 4, 2022
7bff3d7
Update submodule FV3.
BinLiu-NOAA Feb 7, 2022
a04966b
Only enter moving nest code for moving nest configurations
wramstrom Feb 7, 2022
cfd20d1
Enter moving nest code only for moving nest configurations.
wramstrom Feb 7, 2022
cf2b43f
Code cleanup of moving nest modules
wramstrom Feb 8, 2022
f0af03e
Update HAFS RTs to use the new multi output grid capability (#19)
BinLiu-NOAA Feb 9, 2022
f232add
Simplify run_test.sh
DusanJovic-NOAA Feb 9, 2022
80d64c0
Merge remote-tracking branch 'remotes/DJ/multiple_output_grids' into …
BinLiu-NOAA Feb 10, 2022
52ac954
Merge remote-tracking branch 'origin/develop' into multiple_output_grids
DusanJovic-NOAA Feb 10, 2022
4d1ca92
Update fv3
DusanJovic-NOAA Feb 10, 2022
58ee560
Update BL_DATE
DusanJovic-NOAA Feb 10, 2022
63b8efd
update fv3
DusanJovic-NOAA Feb 10, 2022
4b3fdd5
[AutoRT] hera.gnu Job Completed.
BrianCurtis-NOAA Feb 10, 2022
439648d
[AutoRT] hera.intel Job Completed.
BrianCurtis-NOAA Feb 10, 2022
1c8cadb
[AutoRT] orion.intel Job Completed.
BrianCurtis-NOAA Feb 11, 2022
c996a1d
[AutoRT] gaea.intel Job Completed.
BrianCurtis-NOAA Feb 11, 2022
81871dc
[AutoRT] cheyenne.gnu Job Completed.
BrianCurtis-NOAA Feb 11, 2022
bdf6b06
Add RegressionTests_wcoss_dell_p3.log
DusanJovic-NOAA Feb 11, 2022
c5e735c
[AutoRT] cheyenne.intel Job Completed.
BrianCurtis-NOAA Feb 11, 2022
5bf847c
[AutoRT] jet.intel Job Completed.
BrianCurtis-NOAA Feb 11, 2022
cf985db
Added doxygen comments and regularized indentation.
wramstrom Feb 11, 2022
ebd7428
Added doxygen comments and regularized indentation.
wramstrom Feb 11, 2022
8053948
Update FV3
DusanJovic-NOAA Feb 11, 2022
c327a46
Update comment in tests/parm/model_configure_hafs_shared.IN
DusanJovic-NOAA Feb 11, 2022
b34dd7f
Add RegressionTests_wcoss_cray.log
DusanJovic-NOAA Feb 11, 2022
c4de86e
Update FV3
DusanJovic-NOAA Feb 11, 2022
6ec37cd
[AutoRT] hera.intel Job Completed.
BrianCurtis-NOAA Feb 11, 2022
fa76723
[AutoRT] orion.intel Job Completed.
BrianCurtis-NOAA Feb 11, 2022
8952f40
[AutoRT] gaea.intel Job Completed.
BrianCurtis-NOAA Feb 11, 2022
f48de28
Update submodule FV3.
BinLiu-NOAA Feb 13, 2022
73884b1
Merge remote-tracking branch 'remotes/DJ/multiple_output_grids' into …
BinLiu-NOAA Feb 14, 2022
1f215e1
Connected move_nsst to namelist option.
wramstrom Feb 14, 2022
8c8a15a
Revised namelist options for move_nsst in moving nest.
wramstrom Feb 15, 2022
361034c
Moving nest for physics ifd only if using NSST.
wramstrom Feb 15, 2022
f081113
Update submodule FV3.
BinLiu-NOAA Feb 15, 2022
fdacee0
Switch to use fms/2021.04 on Jet to support moving nesting.
BinLiu-NOAA Feb 15, 2022
f5508cc
*Add two coupled HAFS regional moving nesting regression tests:
BinLiu-NOAA Feb 15, 2022
6224ab9
Merge remote-tracking branch 'remotes/upstream/develop' into feature/…
BinLiu-NOAA Feb 15, 2022
4cbf492
Update submodule FV3. And update diag_table_hafs_template so that it …
BinLiu-NOAA Feb 16, 2022
d6b5501
Update submodule FV3.
BinLiu-NOAA Feb 18, 2022
7f58396
Update diag_table_hafs_template.
BinLiu-NOAA Feb 20, 2022
3fc2b96
Upgrade to read in monthly high-resolution albedo information for mov…
wramstrom Feb 25, 2022
6ef6a6d
Handle moving nest interpolation of sfc roughness variables with land…
wramstrom Feb 28, 2022
bbc5974
Merge remote-tracking branch 'remotes/upstream/develop' into feature/…
BinLiu-NOAA Mar 2, 2022
5054b1e
Merge branch 'feature/hafs_nest_cpl' of https://github.com/hafs-commu…
BinLiu-NOAA Mar 2, 2022
46e723c
Reapply handling of NSST being turned off for coupled runs.
wramstrom Mar 3, 2022
823b0a8
Update submodule FV3.
BinLiu-NOAA Mar 4, 2022
8627e0e
Update to use fms/2021.04.
BinLiu-NOAA Mar 5, 2022
fa72026
Added Doxygen documentation and code cleanup.
wramstrom Mar 9, 2022
f8cc033
Merged with code cleanup.
wramstrom Mar 9, 2022
045aa1e
Add zsurf to diag fields for moving nest.
Mar 9, 2022
0f60b14
Update .gitmodules to point to the feature/hafs_nest_cpl_movable_outg…
BinLiu-NOAA Mar 9, 2022
598f576
Update submodule FV3.
BinLiu-NOAA Mar 10, 2022
78e624f
Updated formatting of header comments.
wramstrom Mar 10, 2022
ccdaa0f
Update submodule FV3.
BinLiu-NOAA Mar 11, 2022
6a88fa5
Merge branch 'feature/hafs_nest_cpl_movable_outgrid' of https://githu…
BinLiu-NOAA Mar 11, 2022
104ab94
Update submodule FV3.
BinLiu-NOAA Mar 12, 2022
f3b4999
Update the some of the HAFS moving nesting regression tests.
BinLiu-NOAA Mar 12, 2022
fe08a6a
Merge remote-tracking branch 'remotes/origin/feature/hafs_nest_cpl' i…
BinLiu-NOAA Mar 12, 2022
37b2e68
Update submodule FV3.
BinLiu-NOAA Mar 13, 2022
ebc818a
Update submodule FV3.
BinLiu-NOAA Mar 13, 2022
dedf9b2
Update submodule FV3.
BinLiu-NOAA Mar 13, 2022
389430f
*Update submodule FV3.
BinLiu-NOAA Mar 15, 2022
fd634d3
Update Coriolis terms after nest move.
wramstrom Mar 22, 2022
916423e
Update submodule FV3.
BinLiu-NOAA Mar 23, 2022
c60cd4d
Simplified call to EOSHIFT for compiler portability. Now omits BOUND…
wramstrom Mar 24, 2022
72e94d6
Merge remote-tracking branch 'remotes/upstream/develop' into feature/…
BinLiu-NOAA Mar 25, 2022
68cf2a2
update submodule FV3.
BinLiu-NOAA Mar 25, 2022
046dc94
*Remove the regional_hafs RT.
BinLiu-NOAA Mar 26, 2022
1df128b
Merge remote-tracking branch 'remotes/upstream/develop' into feature/…
BinLiu-NOAA Mar 26, 2022
59b545d
Modularization of moving nest and automated storm tracker.
wramstrom Mar 31, 2022
3baba69
Separate moving_nest code into its own directory.
wramstrom Mar 31, 2022
d0731e1
Merge remote-tracking branch 'remotes/upstream/develop' into feature/…
BinLiu-NOAA Mar 31, 2022
176476f
Update BL_DATE to 20220331 and use 240 PEs for the hafs_global_storm_…
BinLiu-NOAA Mar 31, 2022
3c785bf
Update the baseline file lists for the following two regression tests:
BinLiu-NOAA Mar 31, 2022
18fd991
Made call to EOSHIFT portable to gfortran.
wramstrom Mar 31, 2022
8c12300
Removed commented-out code from fv_control.F90.
wramstrom Mar 31, 2022
b6a0acc
Revert logging output in fv_diagnostics.F90 to original format.
wramstrom Mar 31, 2022
7ac3eed
Update submodule FV3.
BinLiu-NOAA Apr 1, 2022
963facc
Remove moving nest debugging statements from dycore core.
wramstrom Apr 1, 2022
976becb
Merge remote-tracking branch 'remotes/upstream/develop' into feature/…
BinLiu-NOAA Apr 4, 2022
39ce702
Update submodule FV3.
BinLiu-NOAA Apr 4, 2022
a4e40f6
Update submodule FV3.
BinLiu-NOAA Apr 5, 2022
bcb327a
Moving nest bug fix for nest edge on prime meridian.
wramstrom Apr 6, 2022
6f700b3
Update submodule FV3.
BinLiu-NOAA Apr 7, 2022
9ce5dcc
Update submodule FV3.
BinLiu-NOAA Apr 8, 2022
e88254f
Update submodule FV3.
BinLiu-NOAA Apr 8, 2022
d154474
Merge remote-tracking branch 'upstream/develop' into feature/hafs_nes…
BinLiu-NOAA Apr 8, 2022
3871eef
Update submodule FV3.
BinLiu-NOAA Apr 8, 2022
26438dd
Update submodule FV3.
BinLiu-NOAA Apr 8, 2022
cbc7d83
Add RegressionTests_wcoss_cray.log
DusanJovic-NOAA Apr 8, 2022
c5730cf
[AutoRT] cheyenne.gnu Job Completed.
BrianCurtis-NOAA Apr 8, 2022
2ab1522
[AutoRT] hera.gnu Job Completed.
BrianCurtis-NOAA Apr 8, 2022
a04769e
[AutoRT] hera.intel Job Completed.
BrianCurtis-NOAA Apr 8, 2022
dac3ff5
[AutoRT] cheyenne.intel Job Completed.
BrianCurtis-NOAA Apr 8, 2022
32a71ef
Add RegressionTests_wcoss_dell_p3.log
DusanJovic-NOAA Apr 9, 2022
0792e3e
[AutoRT] jet.intel Job Completed.
BrianCurtis-NOAA Apr 9, 2022
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[AutoRT] orion.intel Job Completed.
BrianCurtis-NOAA Apr 9, 2022
ee22996
[AutoRT] gaea.intel Job Completed.
BrianCurtis-NOAA Apr 10, 2022
1e6f6bb
Update submodule FV3.
BinLiu-NOAA Apr 11, 2022
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2 changes: 2 additions & 0 deletions CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -62,6 +62,7 @@ set(DEBUG OFF CACHE BOOL "Enable DEBUG mode")
set(DEBUG_LINKMPI ON CACHE BOOL "Enable linkmpi option when DEBUG mode is on")
set(INLINE_POST OFF CACHE BOOL "Enable inline post")
set(MULTI_GASES OFF CACHE BOOL "Enable MULTI_GASES")
set(MOVING_NEST OFF CACHE BOOL "Enable moving nest code")
set(OPENMP ON CACHE BOOL "Enable OpenMP threading")
set(PARALLEL_NETCDF OFF CACHE BOOL "Enable parallel NetCDF")
set(REPRO OFF CACHE BOOL "Enable REPRO mode")
Expand All @@ -86,6 +87,7 @@ message("DEBUG ............ ${DEBUG}")
message("DEBUG_LINKMPI .... ${DEBUG_LINKMPI}")
message("INLINE_POST ...... ${INLINE_POST}")
message("MULTI_GASES ...... ${MULTI_GASES}")
message("MOVING_NEST ...... ${MOVING_NEST}")
message("OPENMP ........... ${OPENMP}")
message("PARALLEL_NETCDF .. ${PARALLEL_NETCDF}")
message("REPRO ............ ${REPRO}")
Expand Down
330 changes: 165 additions & 165 deletions tests/RegressionTests_cheyenne.gnu.log

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1,431 changes: 746 additions & 685 deletions tests/RegressionTests_cheyenne.intel.log

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1,429 changes: 745 additions & 684 deletions tests/RegressionTests_gaea.intel.log

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336 changes: 168 additions & 168 deletions tests/RegressionTests_hera.gnu.log

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1,465 changes: 763 additions & 702 deletions tests/RegressionTests_hera.intel.log

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1,241 changes: 614 additions & 627 deletions tests/RegressionTests_jet.intel.log

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1,439 changes: 750 additions & 689 deletions tests/RegressionTests_orion.intel.log

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1,139 changes: 546 additions & 593 deletions tests/RegressionTests_wcoss_cray.log

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1,549 changes: 785 additions & 764 deletions tests/RegressionTests_wcoss_dell_p3.log

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7 changes: 7 additions & 0 deletions tests/default_vars.sh
Original file line number Diff line number Diff line change
Expand Up @@ -1563,6 +1563,13 @@ export JNPES=$JNPES_dflt
export TASKS=$TASKS_dflt
export TPN=$TPN_dflt

export IS_MOVING_NEST=".false."
export VORTEX_TRACKER=0
export NTRACK=0
export MOVE_CD_X=0
export MOVE_CD_Y=0
export CPL_IMP_MRG=.true.

export OUTPUT_GRID=''
export IMO=''
export JMO=''
Expand Down
19 changes: 16 additions & 3 deletions tests/fv3_conf/hafs_fv3_run.IN
Original file line number Diff line number Diff line change
Expand Up @@ -13,10 +13,16 @@ if [ ${CNTL_DIR} = "hafs_regional_atm" ] || \
[ ${CNTL_DIR} = "hafs_regional_docn" ] || \
[ ${CNTL_DIR} = "hafs_regional_docn_oisst" ]; then
cp -r @[INPUTDATA_ROOT]/FV3_hafs_input_data/INPUT_hafs_regional_atm/* ./INPUT/
elif [ ${CNTL_DIR} = "hafs_regional_storm_following_1nest_atm" ] || \
[ ${CNTL_DIR} = "hafs_regional_specified_moving_1nest_atm" ] || \
[ ${CNTL_DIR} = "hafs_regional_storm_following_1nest_atm_ocn" ] || \
[ ${CNTL_DIR} = "hafs_regional_storm_following_1nest_atm_ocn_wav" ]; then
cp -r @[INPUTDATA_ROOT]/FV3_hafs_input_data/INPUT_hafs_regional_storm_following_1nest_atm/* ./INPUT/
elif [ ${CNTL_DIR} = "hafs_regional_1nest_atm" ] || \
[ ${CNTL_DIR} = "hafs_regional_telescopic_2nests_atm" ] || \
[ ${CNTL_DIR} = "hafs_global_1nest_atm" ] || \
[ ${CNTL_DIR} = "hafs_global_multiple_4nests_atm" ]; then
[ ${CNTL_DIR} = "hafs_regional_telescopic_2nests_atm" ] || \
[ ${CNTL_DIR} = "hafs_global_1nest_atm" ] || \
[ ${CNTL_DIR} = "hafs_global_multiple_4nests_atm" ] || \
[ ${CNTL_DIR} = "hafs_global_storm_following_1nest_atm" ]; then
cp -r @[INPUTDATA_ROOT]/FV3_hafs_input_data/INPUT_${CNTL_DIR}/* ./INPUT/
else
echo "Error: unsupported experiments ${CNTL_DIR}"
Expand All @@ -28,3 +34,10 @@ if [ ${CNTL_DIR} = "hafs_regional_atm_thompson_gfdlsf" ]; then
cp @[INPUTDATA_ROOT]/FV3_input_data_gsd/freezeH2O.dat .
cp @[INPUTDATA_ROOT]/FV3_input_data_gsd/CCN_ACTIVATE.BIN .
fi

if [[ $POSTAPP = 'hafs' ]]; then
cp ${PATHRT}/parm/post_itag_hafs itag
cp ${PATHRT}/parm/postxconfig-NT-hafs.txt postxconfig-NT.txt
cp ${PATHRT}/parm/postxconfig-NT-hafs.txt postxconfig-NT_FH00.txt
cp ${PATHRT}/parm/params_grib2_tbl_new params_grib2_tbl_new
fi
9 changes: 7 additions & 2 deletions tests/fv3_conf/hafs_ww3_run.IN
Original file line number Diff line number Diff line change
@@ -1,9 +1,14 @@

if [ ${CNTL_DIR} = "hafs_regional_atm_wav" ] || \
[ ${CNTL_DIR} = "hafs_regional_atm_ocn_wav" ]; then
[ ${CNTL_DIR} = "hafs_regional_atm_ocn_wav" ] || \
[ ${CNTL_DIR} = "hafs_regional_storm_following_1nest_atm_ocn_wav" ]; then
cp @[INPUTDATA_ROOT_WW3]/mod_def.natl_6m ./mod_def.ww3
cp @[INPUTDATA_ROOT_WW3]/mod_def.points ./mod_def.points
cp @[INPUTDATA_ROOT_WW3]/wind.natl_6m ./wind.ww3
if [ ${CNTL_DIR} = "hafs_regional_storm_following_1nest_atm_ocn_wav" ]; then
cp @[INPUTDATA_ROOT]/FV3_hafs_input_data/WW3_hafs_regional_input_data/wind.natl_6m_2020082512 ./wind.ww3
else
cp @[INPUTDATA_ROOT_WW3]/wind.natl_6m ./wind.ww3
fi
# Currently, provide a non-existing symbolic link for nest.ww3
ln -sf @[INPUTDATA_ROOT_WW3]/nest.ww3 ./
else
Expand Down
7 changes: 6 additions & 1 deletion tests/fv3_conf/hycom_hat10_run.IN
Original file line number Diff line number Diff line change
@@ -1,2 +1,7 @@

rsync -arv @[INPUTDATA_ROOT]/HYCOM_regional_input_data/. ./
if [ ${CNTL_DIR} = "hafs_regional_storm_following_1nest_atm_ocn" ] || \
[ ${CNTL_DIR} = "hafs_regional_storm_following_1nest_atm_ocn_wav" ]; then
rsync -arv @[INPUTDATA_ROOT]/FV3_hafs_input_data/HYCOM_hafs_regional_input_data/. ./
else
rsync -arv @[INPUTDATA_ROOT]/HYCOM_regional_input_data/. ./
fi
5 changes: 0 additions & 5 deletions tests/fv3_conf/regional_run.IN
Original file line number Diff line number Diff line change
Expand Up @@ -24,11 +24,6 @@ if [[ $POSTAPP = 'lam' ]]; then
cp ${PATHRT}/parm/postxconfig-NT-fv3lam.txt postxconfig-NT.txt
cp ${PATHRT}/parm/postxconfig-NT-fv3lam.txt postxconfig-NT_FH00.txt
cp ${PATHRT}/parm/params_grib2_tbl_new params_grib2_tbl_new
elif [[ $POSTAPP = 'hafs' ]]; then
cp ${PATHRT}/parm/post_itag_hafs itag
cp ${PATHRT}/parm/postxconfig-NT-hafs.txt postxconfig-NT.txt
cp ${PATHRT}/parm/postxconfig-NT-hafs.txt postxconfig-NT_FH00.txt
cp ${PATHRT}/parm/params_grib2_tbl_new params_grib2_tbl_new
fi

if [ $DO_RRTMGP = .true. ]; then
Expand Down
5 changes: 0 additions & 5 deletions tests/fv3_conf/regional_run_stoch.IN
Original file line number Diff line number Diff line change
Expand Up @@ -10,11 +10,6 @@ if [[ $POSTAPP = 'lam' ]]; then
cp ${PATHRT}/parm/postxconfig-NT-fv3lam.txt postxconfig-NT.txt
cp ${PATHRT}/parm/postxconfig-NT-fv3lam.txt postxconfig-NT_FH00.txt
cp ${PATHRT}/parm/params_grib2_tbl_new params_grib2_tbl_new
elif [[ $POSTAPP = 'hafs' ]]; then
cp ${PATHRT}/parm/post_itag_hafs itag
cp ${PATHRT}/parm/postxconfig-NT-hafs.txt postxconfig-NT.txt
cp ${PATHRT}/parm/postxconfig-NT-hafs.txt postxconfig-NT_FH00.txt
cp ${PATHRT}/parm/params_grib2_tbl_new params_grib2_tbl_new
fi

if [ $DO_RRTMGP = .true. ]; then
Expand Down
55 changes: 48 additions & 7 deletions tests/parm/diag_table/diag_table_hafs_template
Original file line number Diff line number Diff line change
Expand Up @@ -2,11 +2,13 @@ ufs.hafs
@[SYEAR] @[SMONTH] @[SDAY] @[SHOUR] 0 0

#output files
"grid_spec", -1, "months", 1, "days", "time"
"grid_spec", -1, "months", 1, "days", "time"
#"atmos_4xdaily", 1, "hours", 1, "days", "time"
"atmos_static", -1, "hours", 1, "hours", "time"
"fv3_history", 0, "hours", 1, "hours", "time"
"fv3_history2d", 0, "hours", 1, "hours", "time"
"atmos_static", -1, "hours", 1, "hours", "time"
"grid_mspec%4yr%2mo%2dy%2hr", 3, "hours", 1, "hours", "time", 3, "hours"
"atmos_diag%4yr%2mo%2dy%2hr", 3, "hours", 1, "hours", "time", 3, "hours"
"fv3_history", 0, "hours", 1, "hours", "time"
"fv3_history2d", 0, "hours", 1, "hours", "time"
#"ref3D", 0, "hours", 1, "hours", "time"
#"maxmin2D", 1, "hours", 1, "hours", "time"

Expand All @@ -17,11 +19,21 @@ ufs.hafs
###
# grid_spec
###
"dynamics", "grid_lon", "grid_lon", "grid_spec", "all", .false., "none", 2,
"dynamics", "grid_lat", "grid_lat", "grid_spec", "all", .false., "none", 2,
"dynamics", "grid_lon", "grid_lon", "grid_spec", "all", .false., "none", 2,
"dynamics", "grid_lat", "grid_lat", "grid_spec", "all", .false., "none", 2,
"dynamics", "grid_lont", "grid_lont", "grid_spec", "all", .false., "none", 2,
"dynamics", "grid_latt", "grid_latt", "grid_spec", "all", .false., "none", 2,
"dynamics", "area", "area", "grid_spec", "all", .false., "none", 2,
"dynamics", "area", "area", "grid_spec", "all", .false., "none", 2,
###
# grid_mspec
###
"dynamics", "grid_mlon", "grid_lon", "grid_mspec%4yr%2mo%2dy%2hr", "all", .false., "none", 2,
"dynamics", "grid_mlat", "grid_lat", "grid_mspec%4yr%2mo%2dy%2hr", "all", .false., "none", 2,
"dynamics", "grid_mlont", "grid_lont", "grid_mspec%4yr%2mo%2dy%2hr", "all", .false., "none", 2,
"dynamics", "grid_mlatt", "grid_latt", "grid_mspec%4yr%2mo%2dy%2hr", "all", .false., "none", 2,
"dynamics", "marea", "area", "grid_mspec%4yr%2mo%2dy%2hr", "all", .false., "none", 2,
#"dynamics", "mdx", "dx", "grid_mspec%4yr%2mo%2dy%2hr", "all", .false., "none", 2,
#"dynamics", "mdy", "dy", "grid_mspec%4yr%2mo%2dy%2hr", "all", .false., "none", 2,
###
# 4x daily output
###
Expand Down Expand Up @@ -107,6 +119,35 @@ ufs.hafs
"dynamics", "hybm", "hybm", "atmos_static", "all", .false., "none", 2
"dynamics", "zsurf", "zsurf", "atmos_static", "all", .false., "none", 2
###
# GFDL tracker needed variables
###
#"dynamics", "grid_lon", "grid_lon", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2,
#"dynamics", "grid_lat", "grid_lat", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2,
"dynamics", "grid_mlon", "grid_lon", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2,
"dynamics", "grid_mlat", "grid_lat", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2,
"dynamics", "vort850", "vort850", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "vort700", "vort700", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "us", "us", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "u850", "u850", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "u700", "u700", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "u500", "u500", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "vs", "vs", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "v850", "v850", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "v700", "v700", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "v500", "v500", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "t850", "t850", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "t500", "t500", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "t300", "t300", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "slp", "slp", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "z850", "z850", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "z700", "z700", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "z500", "z500", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "z200", "z200", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "rh850", "rh850", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
"dynamics", "rh500", "rh500", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
#"gfs_phys", "u10m", "u10m", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
#"gfs_phys", "v10m", "v10m", "atmos_diag%4yr%2mo%2dy%2hr", "all", .false., "none", 2
###
# FV3 variabls needed for NGGPS evaluation
###
"gfs_dyn", "ucomp", "ugrd", "fv3_history", "all", .false., "none", 2
Expand Down
9 changes: 9 additions & 0 deletions tests/parm/input_global_hafs.nml.IN
Original file line number Diff line number Diff line change
Expand Up @@ -126,6 +126,15 @@
nest_joffsets= @[NEST_JOFFSETS]
/

&fv_moving_nest_nml
surface_dir = "INPUT/moving_nest"
is_moving_nest = @[IS_MOVING_NEST]
vortex_tracker = @[VORTEX_TRACKER]
ntrack = @[NTRACK]
move_cd_x = @[MOVE_CD_X]
move_cd_y = @[MOVE_CD_Y]
/

&surf_map_nml
zero_ocean = .false.
cd4 = 0.15
Expand Down
9 changes: 9 additions & 0 deletions tests/parm/input_regional_hafs.nml.IN
Original file line number Diff line number Diff line change
Expand Up @@ -130,6 +130,15 @@
nest_joffsets= @[NEST_JOFFSETS]
/

&fv_moving_nest_nml
surface_dir = "INPUT/moving_nest"
is_moving_nest = @[IS_MOVING_NEST]
vortex_tracker = @[VORTEX_TRACKER]
ntrack = @[NTRACK]
move_cd_x = @[MOVE_CD_X]
move_cd_y = @[MOVE_CD_Y]
/

&surf_map_nml
zero_ocean = .false.
cd4 = 0.15
Expand Down
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