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[develop] Use templates for METplus config files #683

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7b2ae3b
Specify location of staged forecast output for vx in the machine file…
gsketefian Feb 9, 2023
3b8c582
Merge branch 'develop' into feature/vx_stage_fcst_by_platform
gsketefian Feb 13, 2023
c6bcff0
Undo unnecessary changes in a previous commit.
gsketefian Feb 13, 2023
1cf3266
Add experiment variable TEST_VX_FCST_INPUT_BASEDIR that specifies loc…
gsketefian Feb 14, 2023
ea0a460
Change condition for setting default value of VX_FCST_INPUT_BASEDIR s…
gsketefian Feb 14, 2023
4653165
Merge branch 'develop' into feature/vx_stage_fcst_by_platform
gsketefian Feb 14, 2023
771092d
Ensure that there is a vx task entry defined for each vx task and tha…
gsketefian Feb 8, 2023
dfd1122
Change vx task names to better match final ones we want.
gsketefian Feb 3, 2023
1ba6e28
Modify the way the metplus log files are named to be in line with wha…
gsketefian Feb 16, 2023
8202526
Merge branch 'develop' into feature/rename_vx_tasks
gsketefian Feb 17, 2023
da84e39
Spacing edits.
gsketefian Feb 17, 2023
4aa513d
Merge branch 'develop' into feature/rename_vx_tasks
gsketefian Feb 17, 2023
f734eb1
Change names of METplus log files so that tool names are camel case.
gsketefian Feb 17, 2023
5c00438
Rename ex-scripts for vx tasks so that they're all lower case (as req…
gsketefian Feb 23, 2023
3306a03
Remove extra slashes before ${SLASH_ENSMEM_SUBDIR}.
gsketefian Feb 24, 2023
d9e425d
Bring in changes from another branch for splitting of SFC and UPA tas…
gsketefian Feb 23, 2023
6522c5b
Rename METplus configuration files for surface and upper air.
gsketefian Feb 24, 2023
01eeeda
Change names of METplus conf and log files to follow a more consisten…
gsketefian Feb 25, 2023
df84243
Merge branch 'develop' into feature/rename_vx_tasks
gsketefian Feb 27, 2023
5fb1d72
Allow some of the EnsembleStat tasks to use staged ensemble forecast …
gsketefian Feb 27, 2023
b5f4cc5
In the ex-scripts for deterministic PointStat verification and Ensmeb…
gsketefian Feb 28, 2023
55362d0
Fix for when the value in a bash script input key-value pair contains…
gsketefian Mar 1, 2023
3e68fb5
Add a bash utility script for parsing a METplus time-string template.…
gsketefian Mar 1, 2023
747eb8c
Add a bash utility script for parsing a METplus time-string template.…
gsketefian Mar 1, 2023
561cfa8
Add METplus variable LOG_DIR to common.conf since it is used in all M…
gsketefian Mar 1, 2023
5e89a0c
Merge commit '561cfa8b4a74' into feature/split_pcpcombine
gsketefian Mar 2, 2023
93c48b0
Remove debugging code.
gsketefian Mar 2, 2023
68de47e
Clean up METplus conf file for APCP01h to make it more similar to the…
gsketefian Mar 3, 2023
5064213
In the output of the GridStat tool for APCP01h, add to the MODEL vari…
gsketefian Mar 3, 2023
91e394a
Replace GET_OBS and TN_VX with the more descriptive variables GET_OBS…
gsketefian Mar 6, 2023
28e50eb
Include changes inadvertantly left out of previous commit.
gsketefian Mar 6, 2023
03307b4
Include more changes inadvertantly left out of previous commit.
gsketefian Mar 6, 2023
c6552f1
Split calls to METplus's PcpCombine tool out of the tasks that run de…
gsketefian Mar 7, 2023
167d446
Add constant SECS_PER_HOUR needed by the script eval_METplus_timestr_…
gsketefian Mar 7, 2023
4ebd888
Activate the deterministic tasks in the deterministic vx WE2E tasks. …
gsketefian Mar 7, 2023
a67de48
Add file inadvertantly left out of previous commit.
gsketefian Mar 7, 2023
f8b1e28
Formatting changes and typo fixes in EnsembleStat_APCP03h.conf.
gsketefian Mar 7, 2023
a945fe6
Clean up comments; remove LOG_DIR from conf file since it already app…
gsketefian Mar 7, 2023
3dc7469
More fixes to spacing and comments.
gsketefian Mar 7, 2023
ec6215e
Add the new experiment ENS_TIME_LAG_HRS to config_defaults.sh that co…
gsketefian Mar 7, 2023
acce7ff
Modify the way the METplus configuration variable OBS_GRID_STAT_INPUT…
gsketefian Mar 7, 2023
2a29f5c
Activate both deterministic (for each ensemble member) and ensemble v…
gsketefian Mar 7, 2023
784221e
Strip out the PcpCombine tool out of the METplus config files Ensembl…
gsketefian Mar 7, 2023
9d0833c
Modify the METplus conf files GridStat_ensmean_APCP[03|06|24].conf to…
gsketefian Mar 7, 2023
8a8780f
Re-introduce the ENS_VAR1_THRESH and accompanying variables to Ensemb…
gsketefian Mar 8, 2023
f482905
Modify the METplus conf files GridStat_ensprob_APCP[03|06|24].conf to…
gsketefian Mar 8, 2023
e268c48
Fixes to comments in EnsembleStat_APCP01h.conf so that it is more sim…
gsketefian Mar 8, 2023
385b8a6
Merge branch 'develop' into feature/split_pcpcombine
gsketefian Mar 8, 2023
ed0712d
Remove construction and use of the variable FCST_INPUT_FN_TEMPLATE in…
gsketefian Mar 8, 2023
13e7287
For all deterministic vx tasks that don't already have it, add the me…
gsketefian Mar 8, 2023
f50a95b
Undo all cosmetic changes to GridStat_APCP01h.conf since that's bette…
gsketefian Mar 8, 2023
6a08e87
Undo all cosmetic changes to EnsembleStat_APCP01h.conf since that's b…
gsketefian Mar 8, 2023
923cc3d
Changes left out of previous commit.
gsketefian Mar 8, 2023
3dd08e4
Changes left out of previous commit.
gsketefian Mar 8, 2023
38c87e4
Move CDATE portion of input path to EnsembleStat tasks from METplus c…
gsketefian Mar 8, 2023
bcf0b8f
Changes left out of previous commit.
gsketefian Mar 8, 2023
c247990
Changes left out of previous commit.
gsketefian Mar 8, 2023
50972bf
Add auxiliary functions needed in verification.
gsketefian Mar 8, 2023
1bf887a
Edit comments.
gsketefian Mar 9, 2023
6fe51f8
Rearrange variable location in config_defaults.sh.
gsketefian Mar 9, 2023
b34c40c
For consistency with names of other entities, drop the "_apcp" from t…
gsketefian Mar 10, 2023
1e115e8
Clean up comments in PcpCombine METplus conf files.
gsketefian Mar 10, 2023
9ccac48
Add j-job for PcpCombine tasks (inadvertantly left out of previous co…
gsketefian Mar 10, 2023
10b1f1f
Clean up comments.
gsketefian Mar 10, 2023
42116e9
Remove unused variable TN from PcpCombine tasks in the ROCOTO XML; us…
gsketefian Mar 10, 2023
15d8103
Add j-job for running Pb2nc tasks.
gsketefian Mar 13, 2023
e5b77b3
Add a METplus configuration file for the Pb2nc tool.
gsketefian Mar 13, 2023
4ff49fa
Add ex-script for running Pb2nc tasks.
gsketefian Mar 13, 2023
8c75544
Split out calls to Pb2nc tool into separate tasks; a lot of other cle…
gsketefian Mar 15, 2023
81260fc
Merge branch 'develop' into feature/split_pb2nc
gsketefian Mar 15, 2023
2d0a43e
Merge branch 'develop' into feature/split_pb2nc
gsketefian Mar 16, 2023
8116077
Address PR comments.
gsketefian Mar 17, 2023
8f67a95
Jinja templates for GridStat running on APCP01h, REFC, and RETOP.
gsketefian Mar 17, 2023
bbfd59f
Changes to ROCOTO xml to get templated versions of GridStat tasks for…
gsketefian Mar 17, 2023
f0c035e
Remove trailing whitespace.
gsketefian Mar 17, 2023
45d64aa
Add MRMS obs file name templates.
gsketefian Mar 17, 2023
1b9b3c4
Bug fixes.
gsketefian Mar 18, 2023
e657394
Modify deterministic PointStat tasks in ROCOTO XML and the correspond…
gsketefian Mar 18, 2023
5e7c277
Clean up commented out code.
gsketefian Mar 18, 2023
eb4c75e
In ROCOTO template XML, modify GridStat tasks for APCP > 01 hour so t…
gsketefian Mar 18, 2023
ffec5ac
Minor edits to comments and spacing.
gsketefian Mar 18, 2023
8110865
Modify PointStat_ensmean tasks for SFC and UPA in ROCOTO XML and corr…
gsketefian Mar 18, 2023
7e3f56e
Modify GridStat_ensmean tasks for APCP 01, 03, 06, and 24 hours such …
gsketefian Mar 18, 2023
6a72353
Modify the EnsembleStat METplus config files for APCP so that the nam…
gsketefian Mar 18, 2023
8b86207
Change the METplus config file for the GridStat_ensmean task for REFC…
gsketefian Mar 18, 2023
c7cf2da
Add J-jobs for ensemble mean and probabilistic GridStat and PointStat…
gsketefian Mar 18, 2023
e49845f
Modify ROCOTO XML and conf files to have GridStat_ensprob tasks for a…
gsketefian Mar 18, 2023
ba9fa76
Modify GridStat_enspoint tasks for REFC and RETOP so they can use Jin…
gsketefian Mar 19, 2023
2b9ee61
Change METplus config files for GridStat_ensprob tasks so that they'r…
gsketefian Mar 19, 2023
d56d07c
Modificataions to allow PointStat_ensprob tasks for SFC and UPA to us…
gsketefian Mar 19, 2023
300a88b
Minor edits to comments.
gsketefian Mar 19, 2023
1c95a37
Remove files that are now replaced by GridStat_ensmean_APCPgt01h.conf.
gsketefian Mar 19, 2023
d2a1e1b
Change the METplus config file for the GridStat_ensmean task for RETO…
gsketefian Mar 19, 2023
8744564
Minor edits to comments.
gsketefian Mar 19, 2023
0627d6b
Add j-job and ex-script for running EnsembleStat for APCP, all accumu…
gsketefian Mar 19, 2023
3a1d8b8
Minor bug fixes.
gsketefian Mar 19, 2023
834f0a7
Bug fixes to get EnsembleStat to output all the fields required by do…
gsketefian Mar 19, 2023
4591b61
Edits to comments.
gsketefian Mar 20, 2023
dd97a28
Change METplus conf files for EnsembleStat operating on REFC and RETO…
gsketefian Mar 20, 2023
a153a3a
Fix up comments and spacing.
gsketefian Mar 20, 2023
fcabf72
Change METplus conf files for EnsembleStat operating on SFC and UPA t…
gsketefian Mar 20, 2023
ffb7d25
Edits to comments.
gsketefian Mar 20, 2023
d457ede
Merge branch 'develop' into feature/METplus_templates
gsketefian Mar 20, 2023
82f709e
Delete unneeded METplus config files (replaced by generic "_gt01h" ve…
gsketefian Mar 20, 2023
8b23780
Minor edits for consistency between METplus config files.
gsketefian Mar 20, 2023
3da6fd1
Remove unneeded ex-scripts.
gsketefian Mar 20, 2023
7575132
Remove unneeded j-jobs.
gsketefian Mar 20, 2023
afa4d88
Add files left out of previous commits.
gsketefian Mar 20, 2023
53c9c75
Remove LOG_SUFFIX from vx ex-scripts since it is no longer used in th…
gsketefian Mar 20, 2023
e60213c
Modifications to get NCO mode to work with staged files.
gsketefian Mar 21, 2023
5035ebd
Further fixes to make vx tasks work in NCO mode; add WE2E test for en…
gsketefian Mar 21, 2023
3db65cf
Bug fix.
gsketefian Mar 21, 2023
527b501
Add MET_ensemble_verification_only_vx test to set of fundamental test…
gsketefian Mar 22, 2023
b5e520d
Fix type to address Mike L's PR comments.
gsketefian Mar 22, 2023
450b1c9
Add missing file.
gsketefian Mar 22, 2023
a8d43e4
Introduce a new function (set_met_tool_name.sh) that sets the names o…
gsketefian Mar 22, 2023
8001b51
Rename MET/METplus name-related variables for clarity.
gsketefian Mar 22, 2023
ec333ba
Merge branch 'develop' into feature/METplus_templates
JeffBeck-NOAA Mar 29, 2023
2a07b16
Updates feature/METplus_templates to current develop (#1)
mkavulich May 4, 2023
d16b046
For clarity, rename VX_FCST_INPUT_DIR to VX_FCST_INPUT_BASEDIR.
gsketefian May 5, 2023
188ff28
Remove "mode=serial" attribute of metatasks since that causes a task …
gsketefian May 8, 2023
84f98cb
The PoinStat tasks need to depend on the Pb2nc task because METplus r…
gsketefian May 8, 2023
67fd83a
For the WE2E test MET_verification_only_vx, in the "and" clause of th…
gsketefian May 8, 2023
1ec8bd0
Reintroduce the variable FCST_SUBDIR_TEMPLATE because it is needed wh…
gsketefian May 8, 2023
50a5b8b
Remove variable SLASH_ENSMEM_SUBDIR_OR_NULL from default vx task and …
gsketefian May 9, 2023
5b46af8
For the MET_ensemble_verification_only_vx task, remove dependency of …
gsketefian May 9, 2023
5114ab8
Bug fix.
gsketefian May 9, 2023
46b6c1a
Define ENSMEM_INDX only in those vx tasks that need it (i.e. those th…
gsketefian May 9, 2023
0bb6aad
For the Pb2nc obs task, remove the (undefined) ensemble member name/n…
gsketefian May 9, 2023
f3254cf
Merge branch 'develop' into feature/METplus_templates
gsketefian May 9, 2023
cf33f00
Bug fixes due to inadvertently leaving out some aspects of vx in the …
gsketefian May 9, 2023
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77 changes: 0 additions & 77 deletions jobs/JREGIONAL_RUN_MET_ENSEMBLESTAT_VX_POINT

This file was deleted.

Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,7 @@
#
#-----------------------------------------------------------------------
#
# This script runs METplus for ensemble-stat on the UPP output files by
# initialization time for all forecast hours for gridded analysis.
#
#
#-----------------------------------------------------------------------
#
Expand All @@ -17,7 +16,7 @@
#-----------------------------------------------------------------------
#
. $USHdir/source_util_funcs.sh
source_config_for_task "task_run_vx_ensgrid" ${GLOBAL_VAR_DEFNS_FP}
source_config_for_task "task_run_vx_ensgrid|task_run_vx_enspoint" ${GLOBAL_VAR_DEFNS_FP}
. $USHdir/job_preamble.sh
#
#-----------------------------------------------------------------------
Expand Down Expand Up @@ -52,18 +51,40 @@ print_info_msg "
Entering script: \"${scrfunc_fn}\"
In directory: \"${scrfunc_dir}\"

This is the J-job script for the task that runs METplus for ensemble-stat
on gridded fields by initialization time for all forecast hours.
This is the J-job script for the task that runs either METplus's
gen_ens_prod tool or its ensemble_stat tool for ensemble verification.
========================================================================"
#
#-----------------------------------------------------------------------
#
# Set the name of the MET/METplus tool this task will call. (Note: "sc"
# is for "snake case", i.e. using underscores as separators, and "pc" is
# for "Pascal case", i.e. no separators but first letter of each word
# capitalized.)
#
#-----------------------------------------------------------------------
#
valid_vals_MET_TOOL=( "GENENSPROD" "ENSEMBLESTAT" )
check_var_valid_value "MET_TOOL" "valid_vals_MET_TOOL"

if [ "${MET_TOOL}" = "GENENSPROD" ]; then
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All of this _sc vs _pc logic seems very complicated for something that doesn't seem to influence the code in any way; unless I'm missing something the "snake case" variables are only ever printed to log files. Is there some other reason I am missing?

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Yeah, it's left over from the time when some things were named "grid_stat_..." and others used "GridStat_...". Let me take a look and see if I can simplify.

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@mkavulich I cleaned up the MET/METplus naming code, hopefully to your approval. I removed the code in the J-jobs, and now the ex-scripts don't need arguments and get the variable MET_TOOL directly from the environment. I added a function (get_met_metplus_tool_name.sh) that sets the names of the MET and METplus tools. I want to keep both names still because they are both currently used; maybe we'll simplify the ex-scripts later and use only one of the names to refer to the tool, but let's leave that for another PR. Also, I know we want to do all python scripts, but I haven't gotten a chance to do that yet (will do it in a future PR if someone else doesn't get to it before). Let me know what you think.

Also, I reran the WE2E tests MET_verification_only_vx and MET_ensemble_verification_only_vx, and the both passed.

met_tool_sc="gen_ens_prod"
met_tool_pc="GenEnsProd"
elif [ "${MET_TOOL}" = "ENSEMBLESTAT" ]; then
met_tool_sc="ensemble_stat"
met_tool_pc="EnsembleStat"
fi
#
#-----------------------------------------------------------------------
#
# Call the ex-script for this J-job and pass to it the necessary varia-
# bles.
# bles.
#
#-----------------------------------------------------------------------
#
$SCRIPTSdir/exregional_run_met_ensemblestat_vx_grid.sh || \
$SCRIPTSdir/exregional_run_met_genensprod_or_ensemblestat.sh \
met_tool_sc="${met_tool_sc}" \
met_tool_pc="${met_tool_pc}" || \
print_err_msg_exit "\
Call to ex-script corresponding to J-job \"${scrfunc_fn}\" failed."
#
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,8 @@
#
#-----------------------------------------------------------------------
#
# This script runs METplus for grid-stat on the UPP output files by
# initialization time for all forecast hours.
# This script runs the METplus GridStat or PointStat tool for deterministic
# verification.
#
#-----------------------------------------------------------------------
#
Expand Down Expand Up @@ -52,18 +52,41 @@ print_info_msg "
Entering script: \"${scrfunc_fn}\"
In directory: \"${scrfunc_dir}\"

This is the J-job script for the task that runs METplus for grid-stat
by initialization time for all forecast hours.
This is the J-job script for the task that runs MET/METplus's GridStat
or PointStat tool to perform deterministic verification on a specified
field (or group of fields).
========================================================================"
#
#-----------------------------------------------------------------------
#
# Set the name of the MET/METplus tool this task will call. (Note: "sc"
# is for "snake case", i.e. using underscores as separators, and "pc" is
# for "Pascal case", i.e. no separators but first letter of each word
# capitalized.)
#
#-----------------------------------------------------------------------
#
valid_vals_MET_TOOL=( "GRIDSTAT" "POINTSTAT" )
check_var_valid_value "MET_TOOL" "valid_vals_MET_TOOL"

if [ "${MET_TOOL}" = "GRIDSTAT" ]; then
met_tool_sc="grid_stat"
met_tool_pc="GridStat"
elif [ "${MET_TOOL}" = "POINTSTAT" ]; then
met_tool_sc="point_stat"
met_tool_pc="PointStat"
fi
#
#-----------------------------------------------------------------------
#
# Call the ex-script for this J-job and pass to it the necessary varia-
# bles.
# bles.
#
#-----------------------------------------------------------------------
#
$SCRIPTSdir/exregional_run_met_gridstat_vx.sh || \
$SCRIPTSdir/exregional_run_met_gridstat_or_pointstat_vx.sh \
met_tool_sc="${met_tool_sc}" \
met_tool_pc="${met_tool_pc}" || \
print_err_msg_exit "\
Call to ex-script corresponding to J-job \"${scrfunc_fn}\" failed."
#
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,7 @@
#
#-----------------------------------------------------------------------
#
# This script runs METplus for grid-stat on the UPP output files by
# initialization time for all forecast hours for gridded analysis.
#
#
#-----------------------------------------------------------------------
#
Expand Down Expand Up @@ -52,18 +51,41 @@ print_info_msg "
Entering script: \"${scrfunc_fn}\"
In directory: \"${scrfunc_dir}\"

This is the J-job script for the task that runs METplus for grid-stat
on gridded fields by initialization time for all forecast hours.
This is the J-job script for the task that runs MET/METplus's GridStat
or PointStat tool to perform verification on the ensemble mean of a
specified field (or group of fields).
========================================================================"
#
#-----------------------------------------------------------------------
#
# Set the name of the MET/METplus tool this task will call. (Note: "sc"
# is for "snake case", i.e. using underscores as separators, and "pc" is
# for "Pascal case", i.e. no separators but first letter of each word
# capitalized.)
#
#-----------------------------------------------------------------------
#
valid_vals_MET_TOOL=( "GRIDSTAT" "POINTSTAT" )
check_var_valid_value "MET_TOOL" "valid_vals_MET_TOOL"

if [ "${MET_TOOL}" = "GRIDSTAT" ]; then
met_tool_sc="grid_stat"
met_tool_pc="GridStat"
elif [ "${MET_TOOL}" = "POINTSTAT" ]; then
met_tool_sc="point_stat"
met_tool_pc="PointStat"
fi
#
#-----------------------------------------------------------------------
#
# Call the ex-script for this J-job and pass to it the necessary varia-
# bles.
# bles.
#
#-----------------------------------------------------------------------
#
$SCRIPTSdir/exregional_run_met_gridstat_vx_ensmean.sh || \
$SCRIPTSdir/exregional_run_met_gridstat_or_pointstat_vx_ensmean.sh \
met_tool_sc="${met_tool_sc}" \
met_tool_pc="${met_tool_pc}" || \
print_err_msg_exit "\
Call to ex-script corresponding to J-job \"${scrfunc_fn}\" failed."
#
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,7 @@
#
#-----------------------------------------------------------------------
#
# This script runs METplus for grid-stat on the UPP output files by
# initialization time for all forecast hours for gridded analysis.
#
#
#-----------------------------------------------------------------------
#
Expand Down Expand Up @@ -52,18 +51,41 @@ print_info_msg "
Entering script: \"${scrfunc_fn}\"
In directory: \"${scrfunc_dir}\"

This is the J-job script for the task that runs METplus for grid-stat
on gridded fields by initialization time for all forecast hours.
This is the J-job script for the task that runs METplus's GridStat or
PointStat tool to perform verification on the ensemble frequencies/
probabilities of a specified field (or group of fields).
========================================================================"
#
#-----------------------------------------------------------------------
#
# Set the name of the MET/METplus tool this task will call. (Note: "sc"
# is for "snake case", i.e. using underscores as separators, and "pc" is
# for "Pascal case", i.e. no separators but first letter of each word
# capitalized.)
#
#-----------------------------------------------------------------------
#
valid_vals_MET_TOOL=( "GRIDSTAT" "POINTSTAT" )
check_var_valid_value "MET_TOOL" "valid_vals_MET_TOOL"

if [ "${MET_TOOL}" = "GRIDSTAT" ]; then
met_tool_sc="grid_stat"
met_tool_pc="GridStat"
elif [ "${MET_TOOL}" = "POINTSTAT" ]; then
met_tool_sc="point_stat"
met_tool_pc="PointStat"
fi
#
#-----------------------------------------------------------------------
#
# Call the ex-script for this J-job and pass to it the necessary varia-
# bles.
# bles.
#
#-----------------------------------------------------------------------
#
$SCRIPTSdir/exregional_run_met_gridstat_vx_ensprob.sh || \
$SCRIPTSdir/exregional_run_met_gridstat_or_pointstat_vx_ensprob.sh \
met_tool_sc="${met_tool_sc}" \
met_tool_pc="${met_tool_pc}" || \
print_err_msg_exit "\
Call to ex-script corresponding to J-job \"${scrfunc_fn}\" failed."
#
Expand Down
77 changes: 0 additions & 77 deletions jobs/JREGIONAL_RUN_MET_POINTSTAT_VX

This file was deleted.

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