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[develop] Integrate 'online-cmaq' branch into 'develop' branch: Part …
…1, jjob and ex- scripts (#536) * Add j-job and ex- scripts files for online-cmaq * reviewers comments on ufs-srw-app * remove unnecessary commands Co-authored-by: chan-hoo <[email protected]> Co-authored-by: chan-hoo <[email protected]>
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,108 @@ | ||
| #!/bin/bash | ||
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||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # This script adds extra species for air quality modeling (AQM) to the | ||
| # initial conditions (ICs). | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
|
|
||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Source the variable definitions file and the bash utility functions. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| . $USHdir/source_util_funcs.sh | ||
| source_config_for_task "cpl_aqm_parm" ${GLOBAL_VAR_DEFNS_FP} | ||
| . $USHdir/job_preamble.sh | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Save current shell options (in a global array). Then set new options | ||
| # for this script/function. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| { save_shell_opts; . $USHdir/preamble.sh; } > /dev/null 2>&1 | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Get the full path to the file in which this script/function is located | ||
| # (scrfunc_fp), the name of that file (scrfunc_fn), and the directory in | ||
| # which the file is located (scrfunc_dir). | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" ) | ||
| scrfunc_fn=$( basename "${scrfunc_fp}" ) | ||
| scrfunc_dir=$( dirname "${scrfunc_fp}" ) | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Print message indicating entry into script. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| print_info_msg " | ||
| ======================================================================== | ||
| Entering script: \"${scrfunc_fn}\" | ||
| In directory: \"${scrfunc_dir}\" | ||
| This is the J-job script for the task that copies/fetches to a local | ||
| directory (either from disk or HPSS) the aqm boundary conditions from | ||
| which the model needs. | ||
| ========================================================================" | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Set the name of and create the directory in which the output from this | ||
| # script will be placed (if it doesn't already exist). | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| if [ $RUN_ENVIR = "nco" ]; then | ||
| export INPUT_DATA="${COMIN}" | ||
| else | ||
| export INPUT_DATA="${COMIN}${SLASH_ENSMEM_SUBDIR}/INPUT" | ||
| fi | ||
| mkdir_vrfy -p "${INPUT_DATA}" | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Set the run directory | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| DATA="${DATA:-${COMIN}${SLASH_ENSMEM_SUBDIR}}" | ||
| mkdir_vrfy -p "${DATA}" | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Call the ex-script for this J-job and pass to it the necessary variables. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| $SCRIPTSdir/exregional_aqm_ics.sh || \ | ||
| print_err_msg_exit "\ | ||
| Call to ex-script corresponding to J-job \"${scrfunc_fn}\" failed." | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Run job postamble. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| job_postamble | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Restore the shell options saved at the beginning of this script/function. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| { restore_shell_opts; } > /dev/null 2>&1 | ||
|
|
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,108 @@ | ||
| #!/bin/bash | ||
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||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # This script adds extra species for air quality modeling (AQM) to the | ||
| # lateral boundary conditions (LBCs) files. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
|
|
||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Source the variable definitions file and the bash utility functions. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| . $USHdir/source_util_funcs.sh | ||
| source_config_for_task "task_get_extrn_lbcs|task_make_orog|task_make_lbcs|cpl_aqm_parm" ${GLOBAL_VAR_DEFNS_FP} | ||
| . $USHdir/job_preamble.sh | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Save current shell options (in a global array). Then set new options | ||
| # for this script/function. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| { save_shell_opts; . $USHdir/preamble.sh; } > /dev/null 2>&1 | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Get the full path to the file in which this script/function is located | ||
| # (scrfunc_fp), the name of that file (scrfunc_fn), and the directory in | ||
| # which the file is located (scrfunc_dir). | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" ) | ||
| scrfunc_fn=$( basename "${scrfunc_fp}" ) | ||
| scrfunc_dir=$( dirname "${scrfunc_fp}" ) | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Print message indicating entry into script. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| print_info_msg " | ||
| ======================================================================== | ||
| Entering script: \"${scrfunc_fn}\" | ||
| In directory: \"${scrfunc_dir}\" | ||
| This is the J-job script for the task that copies/fetches to a local | ||
| directory (either from disk or HPSS) the aqm boundary conditions from | ||
| which the model needs. | ||
| ========================================================================" | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Set the name of and create the directory in which the output from this | ||
| # script will be placed (if it doesn't already exist). | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| if [ $RUN_ENVIR = "nco" ]; then | ||
| export INPUT_DATA="${COMIN}" | ||
| else | ||
| export INPUT_DATA="${COMIN}${SLASH_ENSMEM_SUBDIR}/INPUT" | ||
| fi | ||
| mkdir_vrfy -p "${INPUT_DATA}" | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Set the run directory | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| DATA="${DATA:-${COMIN}${SLASH_ENSMEM_SUBDIR}}" | ||
| mkdir_vrfy -p "${DATA}" | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Call the ex-script for this J-job and pass to it the necessary variables. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| $SCRIPTSdir/exregional_aqm_lbcs.sh || \ | ||
| print_err_msg_exit "\ | ||
| Call to ex-script corresponding to J-job \"${scrfunc_fn}\" failed." | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Run job postamble. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| job_postamble | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Restore the shell options saved at the beginning of this script/function. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| { restore_shell_opts; } > /dev/null 2>&1 | ||
|
|
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,101 @@ | ||
| #!/bin/bash | ||
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||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # This script runs BIAS-CORRECTION-O3. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
|
|
||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Source the variable definitions file and the bash utility functions. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| . $USHdir/source_util_funcs.sh | ||
| source_config_for_task "cpl_aqm_parm|task_run_post" ${GLOBAL_VAR_DEFNS_FP} | ||
| . $USHdir/job_preamble.sh | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Save current shell options (in a global array). Then set new options | ||
| # for this script/function. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| { save_shell_opts; . $USHdir/preamble.sh; } > /dev/null 2>&1 | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Get the full path to the file in which this script/function is located | ||
| # (scrfunc_fp), the name of that file (scrfunc_fn), and the directory in | ||
| # which the file is located (scrfunc_dir). | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" ) | ||
| scrfunc_fn=$( basename "${scrfunc_fp}" ) | ||
| scrfunc_dir=$( dirname "${scrfunc_fp}" ) | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Print message indicating entry into script. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| print_info_msg " | ||
| ======================================================================== | ||
| Entering script: \"${scrfunc_fn}\" | ||
| In directory: \"${scrfunc_dir}\" | ||
| This is the J-job script for the task that runs BIAS-CORRECTION-O3. | ||
| ========================================================================" | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Set the run directory. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| DATA="${DATA:-${COMIN}${SLASH_ENSMEM_SUBDIR}}" | ||
|
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| export PARMaqm_utils="${PARMaqm_utils:-${HOMEdir}/sorc/AQM-utils/parm}" | ||
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| TMP_STDAY=`${NDATE} -8760 ${PDY}${cyc} | cut -c1-8` # 1 year back | ||
| # The earliest day of training data is August 1 2020 | ||
| if [ ${TMP_STDAY} -le 20220810 ]; then | ||
| TMP_STDAY=20220810 | ||
| fi | ||
| export BC_STDAY=${BC_STDAY:-${TMP_STDAY}} | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Call the ex-script for this J-job and pass to it the necessary varia- | ||
| # bles. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| $SCRIPTSdir/exregional_bias_correction_o3.sh || \ | ||
| print_err_msg_exit "\ | ||
| Call to ex-script corresponding to J-job \"${scrfunc_fn}\" failed." | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Run job postamble. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| job_postamble | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| # Restore the shell options saved at the beginning of this script/func- | ||
| # tion. | ||
| # | ||
| #----------------------------------------------------------------------- | ||
| # | ||
| { restore_shell_opts; } > /dev/null 2>&1 | ||
|
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