commit files

appyter.json

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+{
+    "$schema": "https://raw.githubusercontent.com/MaayanLab/appyter-catalog/main/schema/appyter-validator.json",
+    "name": "Xena_blitzGSEA",
+    "title": "Xena Gene Set Enrichment Analysis with blitzGSEA",
+    "version": "0.0.1",
+    "description": "Gene set enrichment analysis with blitzGSEA (computationally performant GSEA implementation developed by Maayan Lab) using data from the Xena browser.",
+    "image": "thumbnail.png",
+    "authors": [
+      {
+        "name": "Cally Lin",
+        "email": "[email protected]"
+      }
+    ],
+    "url": "https://github.com/callylin/xena_blitzGSEA_appyter",
+    "tags": [
+      "Enrichment Analysis",
+      "Enrichr",
+      "L1000",
+      "L1000FWD",
+      "RNA-seq",
+      "Xena"
+    ],
+    "license": "CC-BY-NC-SA-4.0",
+    "appyter": {
+      "file": "blitzGSEA_Analysis_Pipeline.ipynb",
+      "profile": "biojupies",
+      "extras": [
+        "toc",
+        "toggle-code"
+      ]
+    }
+  }

deps.txt

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+build-essential
+gcc
+libcurl4-gnutls-dev
+libssl-dev
+libxml2-dev
+make

requirements.txt

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+appyter @ git+https://github.com/Maayanlab/appyter.git
+blitzgsea @ git+https://github.com/Maayanlab/blitzgsea
+maayanlab-bioinformatics @ git+https://github.com/Maayanlab/[email protected]
+geode @ git+https://github.com/Maayanlab/geode
+dash
+plotly
+rpy2
+ipython 
+numpy
+pandas
+urllib3
+chart_studio
+scipy 
+requests
+certifi
+sklearn
+smart_open
+jupyter_dash