NSHMDB Improvements for Workflow + Rupture Explorer #7

	name: Pytest Check

	on: [pull_request]

	jobs:
	test:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout code
	uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.x"
	- name: Install GMT
	run: sudo apt-get update && sudo apt-get install -y gmt libgmt-dev ghostscript
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -e .
	- name: Initialise DuckDB
	run: python -c "import duckdb; duckdb.sql('INSTALL sqlite')"

	- name: Run tests
	run: \|
	pytest --cov=nshmdb --cov-report=html tests

	- name: Upload coverage data
	uses: actions/upload-artifact@v4
	with:
	name: coverage-data
	path: .coverage
	include-hidden-files: true
	if-no-files-found: ignore

	coverage:
	needs: test
	runs-on: ubuntu-latest

	steps:
	- name: Check out the repo
	uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: 3.12

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade coverage[toml]

	- name: Download coverage data
	uses: actions/download-artifact@v4
	with:
	name: coverage-data

	- name: Combine coverage and fail it it’s under 95 %
	run: \|
	python -m coverage html --skip-covered --skip-empty

	# Report and write to summary.
	python -m coverage report \| sed 's/^/ /' >> $GITHUB_STEP_SUMMARY

	# Report again and fail if under 95%.
	python -Im coverage report --fail-under=95

	- name: Upload HTML report if check failed
	uses: actions/upload-artifact@v4

	with:
	name: html-report
	path: htmlcov

	if: ${{ failure() }}

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