uc-cdis · jawadqur · Apr 2, 2024 · Apr 2, 2024
diff --git a/.secrets.baseline b/.secrets.baseline
@@ -3,7 +3,7 @@
     "files": "^.secrets.baseline$",
     "lines": null
   },
-  "generated_at": "2024-03-15T18:22:32Z",
+  "generated_at": "2024-04-02T20:57:28Z",
   "plugins_used": [
     {
       "name": "AWSKeyDetector"
@@ -108,6 +108,15 @@
         "type": "Secret Keyword"
       }
     ],
+    "docs/kubernetes-in-docker.md": [
+      {
+        "hashed_secret": "5320294d100314ce19330d99abada8c26c4993a3",
+        "is_secret": false,
+        "is_verified": false,
+        "line_number": 96,
+        "type": "Secret Keyword"
+      }
+    ],
     "examples/gke_dev_values.yaml": [
       {
         "hashed_secret": "75cb4c02576c9abae38fadc84bc832f2af203f3e",
@@ -143,18 +152,25 @@
       }
     ],
     "helm/audit/README.md": [
+      {
+        "hashed_secret": "a04a85e28ae4f699c0f8d014ad41160c9b9206f0",
+        "is_secret": false,
+        "is_verified": false,
+        "line_number": 39,
+        "type": "Secret Keyword"
+      },
       {
         "hashed_secret": "d84ce25b0f9bc2cc263006ae39453efb22cc2900",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 64,
+        "line_number": 65,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "f09dd6e359833a12f48c4c4255d6e87a6e55cfe9",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 84,
+        "line_number": 85,
         "type": "Secret Keyword"
       }
     ],
@@ -210,7 +226,7 @@
     ],
     "helm/fence/README.md": [
       {
-        "hashed_secret": "4d10c0e4e0b7e73c9e709a15b81dbfa7ed3d91cc",
+        "hashed_secret": "7f57cb0116aa983d9844a39f6da9244cf98036b1",
         "is_secret": false,
         "is_verified": false,
         "line_number": 92,
@@ -220,28 +236,28 @@
         "hashed_secret": "b266a6d0f00bb36f6b98134bf4cec71f2d7943a3",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 100,
+        "line_number": 102,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "d84ce25b0f9bc2cc263006ae39453efb22cc2900",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 125,
+        "line_number": 127,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "f09dd6e359833a12f48c4c4255d6e87a6e55cfe9",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 152,
+        "line_number": 154,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "9d8fada0e01336e865c461bb3549084d206fe6da",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 198,
+        "line_number": 200,
         "type": "Secret Keyword"
       }
     ],
@@ -305,23 +321,23 @@
         "hashed_secret": "5d07e1b80e448a213b392049888111e1779a52db",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 1957,
+        "line_number": 1961,
         "type": "Secret Keyword"
       }
     ],
     "helm/gen3/README.md": [
       {
-        "hashed_secret": "b266a6d0f00bb36f6b98134bf4cec71f2d7943a3",
+        "hashed_secret": "7422c958ec5a8e5f87c9e81cdf426ef0e193332c",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 99,
+        "line_number": 75,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "1740c48fa3141d4851b14f97e3bc0f46f7670672",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 133,
+        "line_number": 107,
         "type": "Secret Keyword"
       }
     ],
@@ -369,25 +385,32 @@
       }
     ],
     "helm/indexd/README.md": [
+      {
+        "hashed_secret": "167402961a8c8a8b3764e865e865efa9ada95369",
+        "is_secret": false,
+        "is_verified": false,
+        "line_number": 30,
+        "type": "Secret Keyword"
+      },
       {
         "hashed_secret": "d84ce25b0f9bc2cc263006ae39453efb22cc2900",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 54,
+        "line_number": 55,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "f09dd6e359833a12f48c4c4255d6e87a6e55cfe9",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 73,
+        "line_number": 74,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "1cc98556e7b1353c7bd08344f9190808b0d3d6d4",
         "is_secret": true,
         "is_verified": false,
-        "line_number": 107,
+        "line_number": 108,
         "type": "Secret Keyword"
       }
     ],
@@ -401,11 +424,18 @@
       }
     ],
     "helm/manifestservice/README.md": [
+      {
+        "hashed_secret": "cc524de4657898e872ff46e0a9256f4e186cdfe6",
+        "is_secret": false,
+        "is_verified": false,
+        "line_number": 36,
+        "type": "Secret Keyword"
+      },
       {
         "hashed_secret": "611f2e9064b518afdb23f201321f39029dd28917",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 85,
+        "line_number": 86,
         "type": "Secret Keyword"
       }
     ],
@@ -419,18 +449,25 @@
       }
     ],
     "helm/metadata/README.md": [
+      {
+        "hashed_secret": "cbdb7939a61698c9c866ea614399ef7eb7770c68",
+        "is_secret": false,
+        "is_verified": false,
+        "line_number": 49,
+        "type": "Secret Keyword"
+      },
       {
         "hashed_secret": "d84ce25b0f9bc2cc263006ae39453efb22cc2900",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 72,
+        "line_number": 74,
         "type": "Secret Keyword"
       },
       {
         "hashed_secret": "f09dd6e359833a12f48c4c4255d6e87a6e55cfe9",
         "is_secret": false,
         "is_verified": false,
-        "line_number": 91,
+        "line_number": 93,
         "type": "Secret Keyword"
       }
     ],
@@ -583,27 +620,6 @@
         "is_verified": false,
         "line_number": 79,
         "type": "Secret Keyword"
-      },
-      {
-        "hashed_secret": "c2c4e52c03a03ce3efeb21eb202d301018d4548e",
-        "is_secret": false,
-        "is_verified": false,
-        "line_number": 100,
-        "type": "Secret Keyword"
-      },
-      {
-        "hashed_secret": "afc848c316af1a89d49826c5ae9d00ed769415f3",
-        "is_secret": false,
-        "is_verified": false,
-        "line_number": 109,
-        "type": "Secret Keyword"
-      },
-      {
-        "hashed_secret": "fa4497447699cdb0a81c66a7f21af28a75170195",
-        "is_secret": false,
-        "is_verified": false,
-        "line_number": 111,
-        "type": "Secret Keyword"
       }
     ],
     "helm/sheepdog/sheepdog-secret/config_helper.py": [
@@ -615,7 +631,7 @@
         "type": "Basic Auth Credentials"
       }
     ],
-    "helm/sheepdog/sheepdog-secret/wsgi.py": [
+    "helm/sheepdog/sheepdog-secret/settings.py": [
       {
         "hashed_secret": "347cd9c53ff77d41a7b22aa56c7b4efaf54658e3",
         "is_secret": false,
@@ -624,15 +640,6 @@
         "type": "Basic Auth Credentials"
       }
     ],
-    "helm/sheepdog/values.yaml": [
-      {
-        "hashed_secret": "afc848c316af1a89d49826c5ae9d00ed769415f3",
-        "is_secret": false,
-        "is_verified": false,
-        "line_number": 243,
-        "type": "Secret Keyword"
-      }
-    ],
     "helm/sower/README.md": [
       {
         "hashed_secret": "d84ce25b0f9bc2cc263006ae39453efb22cc2900",

diff --git a/helm/gen3/Chart.yaml b/helm/gen3/Chart.yaml
@@ -56,7 +56,7 @@ dependencies:
   repository: "file://../metadata"
   condition: metadata.enabled
 - name: peregrine
-  version: 0.1.11
+  version: 0.1.12
   repository: "file://../peregrine"
   condition: peregrine.enabled
 - name: pidgin
@@ -76,7 +76,7 @@ dependencies:
   repository: "file://../revproxy"
   condition: revproxy.enabled
 - name: sheepdog
-  version: 0.1.12
+  version: 0.1.13
   repository: "file://../sheepdog"
   condition: sheepdog.enabled
 - name: ssjdispatcher
@@ -115,7 +115,7 @@ type: application
 # This is the chart version. This version number should be incremented each time you make changes
 # to the chart and its templates, including the app version.
 # Versions are expected to follow Semantic Versioning (https://semver.org/)
-version: 0.1.25
+version: 0.1.26
 
 # This is the version number of the application being deployed. This version number should be
 # incremented each time you make changes to the application. Versions are not expected to

diff --git a/helm/gen3/README.md b/helm/gen3/README.md
@@ -1,6 +1,6 @@
 # gen3
 
-![Version: 0.1.25](https://img.shields.io/badge/Version-0.1.25-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: master](https://img.shields.io/badge/AppVersion-master-informational?style=flat-square)
+![Version: 0.1.26](https://img.shields.io/badge/Version-0.1.26-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: master](https://img.shields.io/badge/AppVersion-master-informational?style=flat-square)
 
 Helm chart to deploy Gen3 Data Commons
 
@@ -31,12 +31,12 @@ Helm chart to deploy Gen3 Data Commons
 | file://../indexd | indexd | 0.1.13 |
 | file://../manifestservice | manifestservice | 0.1.12 |
 | file://../metadata | metadata | 0.1.10 |
-| file://../peregrine | peregrine | 0.1.11 |
+| file://../peregrine | peregrine | 0.1.12 |
 | file://../pidgin | pidgin | 0.1.9 |
 | file://../portal | portal | 0.1.10 |
 | file://../requestor | requestor | 0.1.10 |
 | file://../revproxy | revproxy | 0.1.13 |
-| file://../sheepdog | sheepdog | 0.1.12 |
+| file://../sheepdog | sheepdog | 0.1.13 |
 | file://../sower | sower | 0.1.8 |
 | file://../ssjdispatcher | ssjdispatcher | 0.1.8 |
 | file://../wts | wts | 0.1.12 |
@@ -49,7 +49,7 @@ Helm chart to deploy Gen3 Data Commons
 |-----|------|---------|-------------|
 | ambassador.enabled | bool | `true` | Whether to deploy the ambassador subchart. |
 | arborist.enabled | bool | `true` | Whether to deploy the arborist subchart. |
-| argo-wrapper.enabled | bool | `true` | Whether to deploy the argo-wrapper subchart. |
+| argo-wrapper.enabled | bool | `false` | Whether to deploy the argo-wrapper subchart. |
 | audit.enabled | bool | `true` | Whether to deploy the audit subchart. |
 | aws-es-proxy.enabled | bool | `false` | Whether to deploy the aws-es-proxy subchart. |
 | aws-es-proxy.esEndpoint | str | `"test.us-east-1.es.amazonaws.com"` | Elasticsearch endpoint in AWS |

diff --git a/helm/gen3/values.yaml b/helm/gen3/values.yaml
@@ -77,7 +77,7 @@ arborist:
 
 argo-wrapper:
   # -- (bool) Whether to deploy the argo-wrapper subchart.
-  enabled: true
+  enabled: false
 
 audit:
   # -- (bool) Whether to deploy the audit subchart.

diff --git a/helm/peregrine/Chart.yaml b/helm/peregrine/Chart.yaml
@@ -15,13 +15,13 @@ type: application
 # This is the chart version. This version number should be incremented each time you make changes
 # to the chart and its templates, including the app version.
 # Versions are expected to follow Semantic Versioning (https://semver.org/)
-version: 0.1.11
+version: 0.1.12
 
 # This is the version number of the application being deployed. This version number should be
 # incremented each time you make changes to the application. Versions are not expected to
 # follow Semantic Versioning. They should reflect the version the application is using.
 # It is recommended to use it with quotes.
-appVersion: "2023.01"
+appVersion: "master"
 
 
 dependencies:

diff --git a/helm/peregrine/README.md b/helm/peregrine/README.md
@@ -1,6 +1,6 @@
 # peregrine
 
-![Version: 0.1.11](https://img.shields.io/badge/Version-0.1.11-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: 2023.01](https://img.shields.io/badge/AppVersion-2023.01-informational?style=flat-square)
+![Version: 0.1.12](https://img.shields.io/badge/Version-0.1.12-informational?style=flat-square) ![Type: application](https://img.shields.io/badge/Type-application-informational?style=flat-square) ![AppVersion: master](https://img.shields.io/badge/AppVersion-master-informational?style=flat-square)
 
 A Helm chart for gen3 Peregrine service
 
@@ -61,7 +61,7 @@ A Helm chart for gen3 Peregrine service
 | global.tierAccessLevel | string | `"libre"` | Access level for tiers. acceptable values for `tier_access_level` are: `libre`, `regular` and `private`. If omitted, by default common will be treated as `private` |
 | image.pullPolicy | string | `"IfNotPresent"` | When to pull the image. |
 | image.repository | string | `"quay.io/cdis/peregrine"` | The Docker image repository for the fence service |
-| image.tag | string | `""` | Overrides the image tag whose default is the chart appVersion. |
+| image.tag | string | `"feat_jq-audience"` | Overrides the image tag whose default is the chart appVersion. |
 | imagePullSecrets | list | `[]` | Docker image pull secrets. |
 | nameOverride | string | `""` | Override the name of the chart. |
 | nodeSelector | map | `{}` | Node Selector for the pods |

diff --git a/helm/peregrine/values.yaml b/helm/peregrine/values.yaml
@@ -113,7 +113,7 @@ image:
   # -- (string) When to pull the image.
   pullPolicy: IfNotPresent
   # -- (string) Overrides the image tag whose default is the chart appVersion.
-  tag: ""
+  tag: "feat_jq-audience"
 
 # -- (list) Docker image pull secrets.
 imagePullSecrets: []

diff --git a/helm/sheepdog/Chart.yaml b/helm/sheepdog/Chart.yaml
@@ -15,7 +15,7 @@ type: application
 # This is the chart version. This version number should be incremented each time you make changes
 # to the chart and its templates, including the app version.
 # Versions are expected to follow Semantic Versioning (https://semver.org/)
-version: 0.1.12
+version: 0.1.13
 
 # This is the version number of the application being deployed. This version number should be
 # incremented each time you make changes to the application. Versions are not expected to