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Fix test for FASTQ_FASTQC_UMITOOLS_FASTP which included an absolute p…
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…ath in the snapshot. (nf-core#5278)
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@adamrtalbot @tucano
adamrtalbot authored and tucano committed Mar 22, 2024
1 parent 1b7c0e1 commit 9b5d858
Showing 1 changed file with 20 additions and 17 deletions.
37 changes: 20 additions & 17 deletions subworkflows/nf-core/fastq_fastqc_umitools_fastp/tests/main.nf.test
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Original file line number Diff line number Diff line change
Expand Up @@ -610,8 +610,8 @@ nextflow_workflow {
).match()
},

{ assert !workflow.out.fastqc_raw_html},
{ assert !workflow.out.fastqc_raw_zip},
{ assert !workflow.out.fastqc_raw_html },
{ assert !workflow.out.fastqc_raw_zip },
{ assert workflow.out.trim_html },
{ assert workflow.out.trim_log },
{ assert !workflow.out.fastqc_trim_html },
Expand Down Expand Up @@ -669,8 +669,8 @@ nextflow_workflow {
).match()
},

{ assert workflow.out.fastqc_raw_html},
{ assert workflow.out.fastqc_raw_zip},
{ assert workflow.out.fastqc_raw_html },
{ assert workflow.out.fastqc_raw_zip },
{ assert workflow.out.trim_html },
{ assert workflow.out.trim_log },
{ assert workflow.out.fastqc_trim_html },
Expand Down Expand Up @@ -730,8 +730,8 @@ nextflow_workflow {
).match()
},

{ assert workflow.out.fastqc_raw_html},
{ assert workflow.out.fastqc_raw_zip},
{ assert workflow.out.fastqc_raw_html },
{ assert workflow.out.fastqc_raw_zip },
{ assert workflow.out.trim_html },
{ assert workflow.out.trim_log },
{ assert workflow.out.fastqc_trim_html },
Expand Down Expand Up @@ -790,8 +790,8 @@ nextflow_workflow {
).match()
},

{ assert workflow.out.fastqc_raw_html},
{ assert workflow.out.fastqc_raw_zip},
{ assert workflow.out.fastqc_raw_html },
{ assert workflow.out.fastqc_raw_zip },
{ assert workflow.out.trim_html },
{ assert workflow.out.trim_log },
{ assert workflow.out.fastqc_trim_html },
Expand Down Expand Up @@ -839,7 +839,10 @@ nextflow_workflow {
assertAll(
{ assert workflow.success },
{ assert snapshot(
workflow.out.reads,
workflow.out.reads.get(0).get(0), // Reads meta map
// Because the input file is passed to the output file, we have to do check the filename only
file(workflow.out.reads.get(0).get(1).get(0)).name,
file(workflow.out.reads.get(0).get(1).get(1)).name,
workflow.out.umi_log,
workflow.out.trim_json,
workflow.out.trim_reads_fail,
Expand All @@ -850,8 +853,8 @@ nextflow_workflow {
).match()
},

{ assert workflow.out.fastqc_raw_html},
{ assert workflow.out.fastqc_raw_zip},
{ assert workflow.out.fastqc_raw_html },
{ assert workflow.out.fastqc_raw_zip },
{ assert !workflow.out.trim_html },
{ assert !workflow.out.trim_log },
{ assert !workflow.out.fastqc_trim_html },
Expand Down Expand Up @@ -912,8 +915,8 @@ nextflow_workflow {
).match()
},

{ assert workflow.out.fastqc_raw_html},
{ assert workflow.out.fastqc_raw_zip},
{ assert workflow.out.fastqc_raw_html },
{ assert workflow.out.fastqc_raw_zip },
{ assert workflow.out.trim_html },
{ assert workflow.out.trim_log },
{ assert workflow.out.fastqc_trim_html },
Expand Down Expand Up @@ -972,8 +975,8 @@ nextflow_workflow {
).match()
},

{ assert workflow.out.fastqc_raw_html},
{ assert workflow.out.fastqc_raw_zip},
{ assert workflow.out.fastqc_raw_html },
{ assert workflow.out.fastqc_raw_zip },
{ assert workflow.out.trim_html },
{ assert workflow.out.trim_log },
{ assert workflow.out.fastqc_trim_html },
Expand Down Expand Up @@ -1033,8 +1036,8 @@ nextflow_workflow {
).match()
},

{ assert workflow.out.fastqc_raw_html},
{ assert workflow.out.fastqc_raw_zip},
{ assert workflow.out.fastqc_raw_html },
{ assert workflow.out.fastqc_raw_zip },
{ assert workflow.out.trim_html },
{ assert workflow.out.trim_log },
{ assert workflow.out.fastqc_trim_html },
Expand Down

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