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Port the tables and trees sections of the tskit tut #75

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Jun 21, 2021
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1 change: 1 addition & 0 deletions _config.yml
Original file line number Diff line number Diff line change
Expand Up @@ -33,6 +33,7 @@ sphinx:
tskit: ["https://tskit.dev/tskit/docs/stable", null]
msprime: ["https://tskit.dev/msprime/docs/stable", null]
pyslim: ["https://pyslim.readthedocs.io/en/stable", null]
numpy: ["https://numpy.org/doc/stable/", null]
myst_enable_extensions:
- colon_fence
- deflist
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4 changes: 4 additions & 0 deletions _toc.yml
Original file line number Diff line number Diff line change
Expand Up @@ -13,6 +13,10 @@ parts:
- file: simplification
- file: metadata
- file: tskitr
- caption: Analysis
chapters:
- file: analysing_tree_sequences
- file: analysing_trees
- caption: Backward time simulations
# TODO this will be broken down more finely as we add more content
chapters:
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25 changes: 25 additions & 0 deletions analysing_tree_sequences.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,25 @@
---
jupytext:
text_representation:
extension: .md
format_name: myst
format_version: 0.12
jupytext_version: 1.9.1
kernelspec:
display_name: Python 3
language: python
name: python3
---

```{currentmodule} tskit
```

(sec_analysing_tree_sequences)=

# Analysing tree sequences

:::{todo}
Add all stats material from https://tskit.dev/tskit/docs/stable/tutorial.html

Should we rename this "calculating statistics", or something else with the word "statistics" in the name?
:::
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