Discussions

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  Is it noticably more efficient to cache direct-memory arrays such as ts.nodes_time?

  hyanwong asked Nov 25, 2024 in Q&A · Answered

  

  

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  I'm getting a LibraryError talking about "non-empty metadata" when processing tree sequences e.g. from Relate

  hyanwong asked Nov 21, 2024 in Q&A · Answered

  

  

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  Issue with subpopulation processing

  Duramenn asked Nov 18, 2024 in Q&A · Unanswered

  

  

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  Slicing a tree (not a tree sequence) at a specific time

  hyanwong started Nov 14, 2024 in Show and tell

  

  

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  Documentation status of classes and functions

  benjeffery started Oct 17, 2024 in General

  

  

  

  

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  Remove flanking locally-unary regions

  hyanwong asked Jan 13, 2024 in Q&A · Unanswered

  

  

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  Removing isolated unary spans

  petrelharp started Nov 4, 2024 in Show and tell

  

  

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  Set metadata on a single individual or node

  hyanwong asked Jun 30, 2021 in Q&A · Closed · Unanswered

  

  

  

  

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  Adding new population in the unified genealogy

  nbesteban asked Apr 30, 2024 in Q&A · Unanswered

  

  

  

  

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  Using pandas in a PR I'm planning

  Silloky started Jul 20, 2024 in General · Closed

  

  

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  Replacing metadata in rows

  hyanwong started May 28, 2024 in Show and tell

  

  

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  Displaying inheritance nested within a pedigree

  hyanwong started Jul 11, 2024 in Show and tell

  

  

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  Ways to visualize diploid tree sequences that aren't sequences of trees

  enhancement New feature or request Python API Issue is about the Python API Visualisation This issue addresses visualisation

  petrelharp started Feb 19, 2020 in Ideas

  

  

  

  

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  How to reorder a ragged column, e.g. metadata?

  hyanwong asked May 26, 2024 in Q&A · Unanswered

  

  

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  Understanding nodes with multiple parents

  madeline-chase asked May 2, 2024 in Q&A · Unanswered

  

  

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  Creating polytomies by removing edges

  hyanwong started Apr 14, 2024 in Show and tell

  

  

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  Calculating number of extant lineages over time

  JaneeshBansal asked Nov 27, 2023 in Q&A · Answered

  

  

  

  

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  Collapse some coalescence into polytomies

  hyanwong asked Jan 13, 2024 in Q&A · Closed · Unanswered

  

  

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  Tree Sequences with Indels

  reedacartwright asked Oct 9, 2021 in Q&A · Answered

  

  

  

  

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  Extracting branch lengths from mutations

  Schraiber asked Jan 26, 2024 in Q&A · Unanswered

  

  

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  Efficient graph APIs

  jeromekelleher started Nov 10, 2023 in Ideas

  

  

  

  

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  Understanding trait_linear_model

  quattro asked Jan 18, 2024 in Q&A · Answered

  

  

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  Finding tree index from list of positions

  hyanwong started Mar 6, 2023 in Show and tell

  

  

  

  

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  Tree-based representation of quantitative traits

  hanbin973 started Dec 30, 2023 in Ideas

  

  

  

  

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  all nodes_time() - even duplicates

  JaneeshBansal asked Dec 11, 2023 in Q&A · Unanswered

  

  

  

  

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