Create a GFF of MLST loci #26
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* `dbases.xml` was not found when I was running, it and I realized this is the file on the PubMLST site. * It was not clear until I read the code that all the statements are printed to the screen and so I put in a usage statement.
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I added an option
--gffto create a GFF file describing where each locus is in the query genome. Optimally, I would like a gbk file, but I chose to go with gff so that it doesn't add a BioPerl requirement. However, I did add someusestatements for some core modules.