Skip to content

Commit

Permalink
Clarify need to install blat
Browse files Browse the repository at this point in the history
  • Loading branch information
Torsten Seemann committed Mar 14, 2015
1 parent 781c80e commit 114f73a
Showing 1 changed file with 4 additions and 2 deletions.
6 changes: 4 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -10,6 +10,7 @@ The main Perl script and the included databases:
% git clone https://github.com/Victorian-Bioinformatics-Consortium/mlst.git

The only external dependency is the BLAT tools written by Jim Kent: http://genome.ucsc.edu/FAQ/FAQblat.html#blat3
Try typing "blat" to see if you have it. If not, do the following:

% cd $HOME/mlst/bin

Expand All @@ -20,7 +21,7 @@ The only external dependency is the BLAT tools written by Jim Kent: http://genom

% chmod +x blat

Add it to your PATH:
Add everything to your PATH:

% echo "export PATH=$PATH:$HOME/mlst/bin" >> $HOME/.bashrc

Expand Down Expand Up @@ -106,7 +107,8 @@ GPLv2

##Author

Torsten Seemann - http://vicbioinformatics.com/
Torsten Seemann (@torstenseemann)




Expand Down

0 comments on commit 114f73a

Please sign in to comment.