Merge pull request #1 from treebeardtech/init

Init

.devcontainer/Dockerfile

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+# See here for image contents: https://github.com/microsoft/vscode-dev-containers/tree/v0.148.1/containers/python-3/.devcontainer/base.Dockerfile
+ARG VARIANT="3.11"
+FROM mcr.microsoft.com/vscode/devcontainers/python:0-${VARIANT}
+ARG INSTALL_NODE="true"
+ARG NODE_VERSION="lts/*"
+RUN if [ "${INSTALL_NODE}" = "true" ]; then su vscode -c "source /usr/local/share/nvm/nvm.sh && nvm install ${NODE_VERSION} 2>&1"; fi
+USER vscode
+RUN pip3 --disable-pip-version-check --no-cache-dir install -U \
+  'poetry==1.1.13' \
+  'pip==22.1.2'
+RUN npm install -g @devcontainers/[email protected]

.devcontainer/devcontainer.json

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+{
+  "name": "Python 3",
+  "build": {
+    "dockerfile": "Dockerfile",
+    "context": "..",
+    "args": {
+      "VARIANT": "3.10",
+      "INSTALL_NODE": "true",
+      "NODE_VERSION": "18.7"
+    }
+  },
+  "mounts": [
+    "source=${localEnv:HOME}${localEnv:USERPROFILE}/.aws,target=/home/vscode/.aws,type=bind,consistency=cached",
+    "source=${localEnv:HOME}${localEnv:USERPROFILE}/.ssh,target=/home/vscode/.ssh,type=bind,consistency=cached",
+    "source=/var/run/docker.sock,target=/var/run/docker.sock,type=bind,consistency=cached",
+    // Add the paths below if you know you use them on your local machine and want them to be available in your container.
+    //
+    "source=${localEnv:HOME}${localEnv:USERPROFILE}/.zshrc,target=/home/vscode/.zshrc,type=bind,consistency=cached",
+    "source=${localEnv:HOME}${localEnv:USERPROFILE}/.zsh_history,target=/home/vscode/.zsh_history,type=bind,consistency=cached",
+    "source=${localEnv:HOME}${localEnv:USERPROFILE}/.zshenv,target=/home/vscode/.zshenv,type=bind,consistency=cached",
+    // "source=${localEnv:HOME}${localEnv:USERPROFILE}/.kube/config,target=/home/vscode/.kube/config,type=bind,consistency=cached",
+    // "source=${localEnv:HOME}${localEnv:USERPROFILE}/.kc,target=/home/vscode/.kc,type=bind,consistency=cached",
+    // "source=${localEnv:HOME}${localEnv:USERPROFILE}/.azure/msal_http_cache.bin,target=/home/vscode/.azure/msal_http_cache.bin,type=bind,consistency=cached",
+    // "source=${localEnv:HOME}${localEnv:USERPROFILE}/.azure/msal_token_cache.json,target=/home/vscode/.azure/msal_token_cache.json,type=bind,consistency=cached",
+  ],
+  "customizations": {
+    "vscode": {
+      "settings": {
+        "terminal.integrated.defaultProfile.linux": "zsh",
+        "python.pythonPath": "/usr/local/bin/python"
+      },
+      "extensions": [
+        "ms-python.python"
+      ]
+    }
+  },
+  // "containerEnv": {
+  //   "OPENAI_API_KEY": "${localEnv:OPENAI_API_KEY}",
+  //   "PINECONE_API_KEY": "${localEnv:PINECONE_API_KEY}"
+  // },
+  "features": {
+    "ghcr.io/devcontainers/features/docker-in-docker:2": {},
+    "ghcr.io/devcontainers-contrib/features/starship:1": {},
+  },
+  "postCreateCommand": "poetry install",
+  "remoteUser": "vscode"
+}

.github/ISSUE_TEMPLATE/bug_report.md

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+---
+name: Bug report
+about: Create a report to help us improve
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+**Describe the bug**
+A clear and concise description of what the bug is.
+
+**To Reproduce**
+Steps to reproduce the behavior:
+1. Go to '...'
+2. Click on '....'
+3. Scroll down to '....'
+4. See error
+
+**Expected behavior**
+A clear and concise description of what you expected to happen.
+
+**Screenshots**
+If applicable, add screenshots to help explain your problem.
+
+**Desktop (please complete the following information):**
+ - OS: [e.g. iOS]
+ - Browser [e.g. chrome, safari]
+ - Version [e.g. 22]
+
+**Smartphone (please complete the following information):**
+ - Device: [e.g. iPhone6]
+ - OS: [e.g. iOS8.1]
+ - Browser [e.g. stock browser, safari]
+ - Version [e.g. 22]
+
+**Additional context**
+Add any other context about the problem here.

.github/ISSUE_TEMPLATE/feature_request.md

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+---
+name: Feature request
+about: Suggest an idea for this project
+title: ''
+labels: ''
+assignees: ''
+
+---
+
+**Is your feature request related to a problem? Please describe.**
+A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
+
+**Describe the solution you'd like**
+A clear and concise description of what you want to happen.
+
+**Describe alternatives you've considered**
+A clear and concise description of any alternative solutions or features you've considered.
+
+**Additional context**
+Add any other context or screenshots about the feature request here.

.github/workflows/publish-to-pypi.yml

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+name: Publish to PYPI
+on:
+  release:
+    types: [published]
+jobs:
+  build-n-publish:
+    runs-on: ubuntu-22.04
+    steps:
+      - uses: actions/checkout@master
+      - uses: actions/setup-python@v2
+      - run: pip install poetry
+      - run: poetry version ${GITHUB_REF:10}
+      - run: poetry build
+      - run: pip install twine==4.0.1
+      - run: twine upload dist/* -u __token__ -p ${{ secrets.PYPI_API_TOKEN }}
+      - uses: EndBug/[email protected]
+        with:
+            author_name: github-actions
+            author_email: 41898282+github-actions[bot]@users.noreply.github.com
+            add: pyproject.toml
+            branch: main
+            message: Published new version

.github/workflows/pytest.yml

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+name: Pytest
+on:
+  schedule:
+    - cron: 0 13 * * 1 # Every Monday at 1PM UTC (9AM EST)
+  pull_request:
+# test in containerised and OS environments
+jobs:
+  test-container:
+    runs-on: ubuntu-22.04
+    steps:
+      - uses: actions/checkout@v2
+      - run: npm install -g @devcontainers/[email protected]
+      - run: devcontainer up --workspace-folder=.
+      - run: devcontainer exec --workspace-folder=. poetry run pre-commit run --verbose --all-files
+      - run: devcontainer exec --workspace-folder=. poetry run pytest --cov-report=xml --cov=src
+      - uses: codecov/codecov-action@v1
+        with:
+          file: coverage.xml
+  pytest:
+      strategy:
+        fail-fast: false
+        matrix:
+          os:
+            - ubuntu-latest
+            - macos-latest
+          python-version:
+            - "3.8"
+            # - "3.9"
+            # - "3.10"
+            - "3.11"
+      runs-on: ${{ matrix.os }}
+      steps:
+        - uses: actions/checkout@v2
+        - uses: actions/setup-python@v2
+          with:
+            python-version: ${{ matrix.python-version }}
+        - run: pip install poetry
+        - run: poetry install
+        - run: poetry run pytest --cov-report=xml --cov=src
+        - uses: codecov/codecov-action@v1
+          with:
+            file: coverage.xml
+
+# TODO README and workflows for e2e test, package release, devcon build

.github/workflows/test-publish-to-pypi.yml

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+name: Test Publish to PYPI
+on:
+  push:
+    branches:
+      - main
+jobs:
+  build-n-publish:
+    runs-on: ubuntu-22.04
+    steps:
+      - uses: actions/checkout@master
+      - uses: actions/setup-python@v2
+      - run: pip install poetry
+      - name: Set poetry version to dev
+        run: |
+          build_version="$(poetry version -s).dev$(date +%s)"
+          poetry version $build_version
+      - run: poetry build
+      - run: pip install 'pytest==7.1'
+      - run: pip install dist/*gz --force-reinstall
+      - run: nbwrite tests/resources/nbwrite-in/example.yaml
+      - run: pip install dist/*whl --force-reinstall
+      - run: nbwrite tests/resources/nbwrite-in/example.yaml
+      - run: pip install twine==4.0.1
+      - run: twine upload -r testpypi dist/* -u __token__ -p ${{ secrets.TEST_PYPI_API_TOKEN }}

.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+.DS_store
+typeshed
+
+trash
+**/_build
+
+.testvenv
+wandb
+flagged
+test-debug-out
+nbwrite-out