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fix: Add support for SQLite and PostgreSQL for inserting data in SQLA… #467

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@dexters1 dexters1 commented Jan 23, 2025

…lchemyAdapter

Description

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I affirm that all code in every commit of this pull request conforms to the terms of the Topoteretes Developer Certificate of Origin

Summary by CodeRabbit

  • New Features

    • Enhanced database insertion method with improved error handling and logging.
    • Added optional schema name parameter for database operations.
  • Bug Fixes

    • Improved data insertion process with a more robust SQLAlchemy implementation.
    • Added explicit handling for empty data lists.
  • Refactor

    • Updated method signature to provide more flexibility and clarity in database interactions.

@dexters1 dexters1 self-assigned this Jan 23, 2025
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Reviewing files that changed from the base of the PR and between de19016 and 2e1a48e.

📒 Files selected for processing (1)
  • cognee/infrastructure/databases/relational/sqlalchemy/SqlAlchemyAdapter.py (1 hunks)

Walkthrough

The changes focus on the insert_data method in the SQLAlchemyAdapter class, enhancing its data insertion capabilities. The method now uses SQLAlchemy's Core insert approach, with improved error handling and a more flexible implementation. The signature has been modified to make the schema_name parameter optional with a default value of "public", and the method now returns the number of rows inserted.

Changes

File Change Summary
cognee/infrastructure/databases/relational/sqlalchemy/SqlAlchemyAdapter.py - Updated insert_data method signature to be async
- Added optional schema_name parameter with default "public"
- Implemented SQLAlchemy Core insert method with batch optimization
- Added error handling and logging
- Method now returns number of inserted rows

Sequence Diagram

sequenceDiagram
    participant Caller
    participant SQLAlchemyAdapter
    participant SQLAlchemyCore
    participant Database

    Caller->>SQLAlchemyAdapter: insert_data(table_name, data)
    SQLAlchemyAdapter->>SQLAlchemyCore: Prepare insert statement
    alt Data is not empty
        SQLAlchemyCore->>Database: Execute insert
        Database-->>SQLAlchemyCore: Return row count
        SQLAlchemyCore-->>SQLAlchemyAdapter: Return row count
    else Data is empty
        SQLAlchemyAdapter-->>Caller: Return 0
    end
    SQLAlchemyAdapter-->>Caller: Return number of inserted rows
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Poem

🐰 A Rabbit's Ode to Database Delight

With SQLAlchemy's core so bright,
Inserting data, now clean and tight.
Optional schema, rows counted clear,
Errors caught with a programmer's cheer,
Data flows smooth as a carrot's might! 🥕


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Actionable comments posted: 1

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL
Plan: Pro

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Reviewing files that changed from the base of the PR and between 90657a2 and d4453e4.

📒 Files selected for processing (1)
  • cognee/infrastructure/databases/relational/sqlalchemy/SqlAlchemyAdapter.py (1 hunks)
⏰ Context from checks skipped due to timeout of 90000ms (18)
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🔇 Additional comments (1)
cognee/infrastructure/databases/relational/sqlalchemy/SqlAlchemyAdapter.py (1)

80-85: ⚠️ Potential issue

Potential breaking change due to altered method signature.

The insert_data method's signature has been changed from:

async def insert_data(self, schema_name: str, table_name: str, data: list[dict])

to:

async def insert_data(self, table_name: str, data: list[dict], schema_name: Optional[str] = "public") -> int

This reorders parameters and adds a default value for schema_name. If any existing calls to this method use positional arguments, this change can lead to unexpected behavior or runtime errors. It's important to ensure that all invocations of this method throughout the codebase have been updated to reflect this new signature.

Please run the following script to identify any usages of insert_data that may need to be updated:

This script searches for all calls to insert_data outside the file where it's defined, helping to locate and review them for necessary updates.

Comment on lines +108 to +110
except Exception as e:
logger.error(f"Insert failed: {str(e)}")
raise e # Re-raise for error handling upstream
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🛠️ Refactor suggestion

Consider handling specific exceptions and avoid re-raising generic exceptions.

Catching and re-raising the general Exception class might obscure the root cause and make debugging harder. It's better to catch specific exception types that you expect might occur (e.g., SQLAlchemyError) and handle them accordingly. Also, consider defining custom exceptions for your application to provide more context.

Here's how you might adjust the exception handling:

 try:
     # ... (code that might raise an exception)
-except Exception as e:
+except SQLAlchemyError as e:
     logger.error(f"Insert failed: {str(e)}")
-    raise e  # Re-raise for error handling upstream
+    raise DatabaseInsertError(f"Failed to insert data into {table_name}") from e

You'll need to:

  • Import SQLAlchemyError from sqlalchemy.exc.
  • Define a DatabaseInsertError custom exception in your exceptions module to provide more specific error handling upstream.

Committable suggestion skipped: line range outside the PR's diff.

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Actionable comments posted: 0

♻️ Duplicate comments (1)
cognee/infrastructure/databases/relational/sqlalchemy/SqlAlchemyAdapter.py (1)

111-113: ⚠️ Potential issue

Consider handling specific exceptions and avoid re-raising generic exceptions.

Catching and re-raising the general Exception class might obscure the root cause and make debugging harder.

As mentioned in the previous review, consider:

  1. Catching specific exceptions (e.g., SQLAlchemyError)
  2. Using custom exceptions for better error context
  3. Preserving the original exception chain using raise ... from
+from sqlalchemy.exc import SQLAlchemyError
+from cognee.infrastructure.databases.exceptions import DatabaseInsertError
+
 try:
     # ... (code that might raise an exception)
-except Exception as e:
+except SQLAlchemyError as e:
     logger.error(f"Insert failed: {str(e)}")
-    raise e  # Re-raise for error handling upstream
+    raise DatabaseInsertError(f"Failed to insert data into {table_name}") from e
🧹 Nitpick comments (2)
cognee/infrastructure/databases/relational/sqlalchemy/SqlAlchemyAdapter.py (2)

80-89: Enhance the docstring with more details.

While the docstring provides basic information, it could be more comprehensive by including:

  • Parameter descriptions
  • Return value details
  • Example usage

Consider expanding the docstring like this:

-    """
-    Insert data into specified table using SQLAlchemy Core with batch optimization
-    Returns number of inserted rows
-    """
+    """
+    Insert data into specified table using SQLAlchemy Core with batch optimization.
+
+    Args:
+        table_name (str): Name of the table to insert data into
+        data (list[dict]): List of dictionaries containing the data to insert
+        schema_name (Optional[str], optional): Database schema name. Defaults to "public".
+                                             Ignored for SQLite.
+
+    Returns:
+        int: Number of rows successfully inserted
+
+    Example:
+        data = [{"column1": "value1"}, {"column1": "value2"}]
+        rows_inserted = await insert_data("my_table", data)
+    """

98-101: Consider setting SQLite foreign key pragma at connection level.

While enabling foreign keys for SQLite is crucial, setting the pragma for each operation is redundant and could be moved to the connection setup.

Consider moving this to the engine creation in __init__:

 def __init__(self, connection_string: str):
     self.db_path: str = None
     self.db_uri: str = connection_string
 
-    self.engine = create_async_engine(connection_string)
+    connect_args = {}
+    if connection_string.startswith('sqlite'):
+        connect_args['pragma_foreign_keys'] = 'ON'
+    
+    self.engine = create_async_engine(
+        connection_string,
+        connect_args=connect_args
+    )
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📒 Files selected for processing (1)
  • cognee/infrastructure/databases/relational/sqlalchemy/SqlAlchemyAdapter.py (1 hunks)
⏰ Context from checks skipped due to timeout of 90000ms (19)
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🔇 Additional comments (1)
cognee/infrastructure/databases/relational/sqlalchemy/SqlAlchemyAdapter.py (1)

90-92: LGTM! Good use of early return pattern.

The empty data check with appropriate logging is a good practice.

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