NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)

The ImageJ framework for quantification of neuronal anatomy

R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.

R package providing API access to the CATMAID web image annotation tool

Bridge HHMI Janelia MouseLight Database and nat R Package

Support for working with light and electron microscopy fly brain data

Comparative Connectomics of Public and In Progress Drosophila Datasets

Support functions for analysis of Drosophila connectomes especially the FAFB-FlyWire whole brain

The Cx3D modeling framework in SciView and SNT

R package flycircuit

R client utilities for interacting with the neuPrint connectome analysis service

Support for 3D template brains used as targets for image registration

A R Shiny app for sharing and viewing lateral horn data

Support for Drosophila bridging/mirroring registrations in R

Neuroanatomy Toolbox Support for Saalfeld/Bogovic HDF5 Registration Format

Bridge neuroanatomy toolbox ('nat') and 'ANTs' registration tools

Batteries included docker image for full natverse

Interface Between NeuroAnatomy Toolbox and Amira Visualisation Software

R tools for EM tracers