R package for microbiome biomarker discovery

MaAsLin2: Microbiome Multivariate Association with Linear Models

Differential abundance (DA) and correlation analyses for microbial absolute abundance data

Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC function.

Differential analysis of multi-omics data based on the Tweedie distribution

A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.

Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and differential abundance analysis"

Large-scale Benchmarking of Microbial Multivariable Association Methods

Large-scale Benchmarking of Microbial Multivariable Association Methods

A Bayesian model for the differential abundance analysis of microbiome sequencing data

Collection of walkthrough tutorials on how to use Tweedieverse for differential analysis of omics data.

🦠Research project in Bioinformatics Institute 2023-2024

MAPping METastases in Neuroblastoma - spatially and temporally

dar: runs multiple differential abundance analysis methods and through a consensus strategy returns a set of differentially abundant features.

Secondary analysis of Proteomics data in R, developed by the University of Arkansas for Medical Sciences for the NIH NIGMS Sandbox project.