A reproducible RNA-Seq analysis pipeline for Staphylococcus aureus under antibiotic stress, utilizing Nextflow and Singularity. It involves genome mapping, read counting, and statistical analysis to identify differentially expressed genes (DEGs) and generates key visualizations.
shell bash cli r ubuntu nextflow hpc deseq2 google-cloud-platform samtools featurecounts bowtie ngs-analysis cutadapt ngs-pipeline fastqc sratoolkit apptainer
-
Updated
Dec 9, 2024 - R