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  • Joint Genome Institute, Lawrence Berkeley National Laboratory
  • Berkeley, CA

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Achievement: QuickdrawAchievement: StarstruckAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

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@compgenomics2018

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  1. gatech-genemark/ProtHint gatech-genemark/ProtHint Public

    Protein hint generation pipeline for gene finding in eukaryotic genomes

    Python 57 13

  2. Gaius-Augustus/BRAKER Gaius-Augustus/BRAKER Public

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    Perl 373 82

  3. miniprothint miniprothint Public

    Miniprothint selects a set of reliable gene prediction hints from miniprot alignments scored by miniprot boundary scorer.

    Python 7 2

  4. orthodb-clades orthodb-clades Public

    Generation of OrthoDB protein sets for gene prediction experiments

    Python 7 3

  5. Gaius-Augustus/GALBA Gaius-Augustus/GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…

    Perl 137 4

  6. linuxmint/nemo linuxmint/nemo Public

    File browser for Cinnamon

    C 1.3k 301