Releases: tolkit/gfatk
Releases · tolkit/gfatk
Bellonia
Hopefully last release with gfatk linear
fixes. This one fixes an annoying bug where the orientations of the segments were not correct in some cases. Full changelog below.
- Merge pull request #11 from tolkit/fix-linear Sat, 9 Jul 2022 21:05:26 +0100
- Finally fixed linear Sat, 9 Jul 2022 21:00:03 +0100
- Remove printing debugging info. Tue, 5 Jul 2022 17:09:12 +0200
- Small change to logic. Tue, 5 Jul 2022 11:57:18 +0200
- Add prototype fix to be tested for gfatk linear. Increase version number too. Tue, 5 Jul 2022 11:27:51 +0200
- Bug fix in linear when wrong path orientations sometimes used. Mon, 4 Jul 2022 17:02:07 +0200
- Version update Fri, 1 Jul 2022 13:25:49 +0100
- Fix gfatk path, where path only a single segment. Fri, 1 Jul 2022 11:08:42 +0100
Tribounia
Minor things, most notably preventing stack overflows from happening by placing a recursion limit on the gfatk linear
functionality. Other minor changes below:
- Update docs. Tue, 28 Jun 2022 15:27:58 +0100
- Update to v0.2.16. Tue, 28 Jun 2022 15:27:28 +0100
- Print recursion information and depth. Tue, 28 Jun 2022 15:27:05 +0100
- Make error in gfatk path more readable. Tue, 28 Jun 2022 15:24:12 +0100
- Get the version right. Tue, 28 Jun 2022 15:22:44 +0100
- Update examples for tutorial. Tue, 28 Jun 2022 15:21:34 +0100
- Fixes #9. Fall back on normal linearisation if recursion limit exceeded. Tue, 21 Jun 2022 16:40:45 +0100
- Update examples. Thu, 16 Jun 2022 16:21:04 +0100
- Edit version number on README.md page. Thu, 16 Jun 2022 15:33:10 +0100
- Edit examples dir. Update README.md. Thu, 16 Jun 2022 15:31:22 +0100
Cecropia
Important update. A few bugs ironed out in gfatk linear
. Support tabular output in gfatk stats
. See full log below.
- Better error handling on gfatk extract if input node not found. Thu, 16 Jun 2022 09:14:31 +0100
- Paths of length 2 now dealt with in gfatk linear. Wed, 15 Jun 2022 21:44:49 +0100
- Version bump for release. Wed, 15 Jun 2022 17:34:50 +0100
- Bug: gfatk linear fix when evaluating multiple subgraphs. Wed, 15 Jun 2022 17:22:19 +0100
- Minor version release. Wed, 15 Jun 2022 12:27:32 +0100
- Fixes #7. Add node threshold to linear. Wed, 15 Jun 2022 11:34:44 +0100
- Update docs. Tue, 14 Jun 2022 08:23:13 +0100
- Tabular output support for gfatk stats. Tue, 14 Jun 2022 08:22:49 +0100
- Update docs. Mon, 13 Jun 2022 09:52:45 +0100
- Add whether a subgraph is cyclic or not to the output header of gfatk linear . Mon, 13 Jun 2022 09:50:53 +0100
- Update docs accordingly. Fri, 10 Jun 2022 21:58:27 +0100
- Making clippy happier. Fri, 10 Jun 2022 21:56:11 +0100
- Edits to stats. Mito/chloro should output multiple subgraphs matching the criteria. Fri, 10 Jun 2022 15:26:42 +0100
- Linked gfatk linear fasta headers to the subgraph they come from. Thu, 9 Jun 2022 20:28:26 +0100
- Single nodes with the -e flag in gfatk linear are now emitted. Thu, 9 Jun 2022 17:24:41 +0100
- Added info to Cargo.toml for crates.io publish. Mon, 6 Jun 2022 19:58:03 +0100
- Update README.md curl links. Wed, 1 Jun 2022 15:11:28 +0100
Hatiora
Mainly added unit testing, and documentation. Other additions are relatively minor bugs. Full log below.
- Make exit more rusty. Wed, 1 Jun 2022 14:56:26 +0100
- Fix bug of single segment in linear. Wed, 1 Jun 2022 14:52:13 +0100
- Update documentation. Fri, 27 May 2022 11:31:04 +0100
- Update documentation in README.md. Fri, 27 May 2022 11:19:15 +0100
- Fixes #5. gfatk extract takes more than one segment ID. Thu, 26 May 2022 21:26:34 +0100
- Same API to extract-mito. Tue, 10 May 2022 11:30:50 +0100
- More sensible limits to gfatk extract-chloro GC% Mon, 9 May 2022 16:07:39 +0100
- Remove thiserror dependency. Mon, 9 May 2022 12:19:42 +0100
- Closes #3 but now in new subcommand. Closes #4. Mon, 9 May 2022 10:05:00 +0100
- Fixes #1. Linear operates within subgraphs too with a flag. Thu, 28 Apr 2022 16:14:10 +0100
- Update docs. Sun, 24 Apr 2022 18:07:23 +0100
- Add ./src/gfa.rs tests. Sun, 24 Apr 2022 17:40:42 +0100
- Update docs. Sat, 23 Apr 2022 11:34:20 +0100
- Graph tests added. Sat, 23 Apr 2022 11:33:37 +0100
- Adding more tests. Fri, 22 Apr 2022 17:04:44 +0100
- Arrow to comma in fasta header. Tue, 29 Mar 2022 15:55:33 +0100
- Remove spaces from the fasta header. Fri, 25 Mar 2022 17:48:16 +0000
- Typo in fasta header Fri, 25 Mar 2022 16:49:43 +0000
- Remove .DS_Store again... Fri, 25 Mar 2022 16:43:49 +0000
- Add path info to the linearised fasta header. Fri, 25 Mar 2022 16:43:24 +0000
- Update README.md Tue, 15 Mar 2022 12:18:33 +0000
- Remove .DS_Store Tue, 15 Mar 2022 10:56:48 +0000
- Add unit testing. Remove a couple bugs. Tue, 15 Mar 2022 10:55:44 +0000
gfatk 0.1.4
Testing added, and a few bugs removed.
gfatk 0.1.3
First release of the gfatk
tool. Available on Mac & Linux (ubuntu).