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Use filetimes in check_integrity (#1162)
* check the file times in check_integrity * make no-arguments to check_integrity check all commands, and also make check_integrity run git-utimes first this has the downside that the script now takes a little longer. But the upside that it guarantees more correctness. * update git-extras using the incredible power of the new script, I have detected this was out of date, out of sync, etc
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