drop SeuratWrappers

tidyomics · Sep 25, 2024 · 2b65ba6 · 2b65ba6
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -53,15 +53,12 @@ Imports:
     dittoSeq,
     tidybulk,
     glue,
-    SeuratWrappers,
     scater,
     batchelor
 Suggests:
     knitr,
     rmarkdown,
     pkgdown
-Remotes:
-    satijalab/seurat-wrappers
 Biarch: true
 URL: https://tidy-biology.github.io/TidyGenomicsTranscriptomicsWorkshop
 BugReports: https://github.com/tidy-biology/TidyGenomicsTranscriptomicsWorkshop/issues/new/choose

diff --git a/vignettes/single_cell_seurat_transcriptomics.Rmd b/vignettes/single_cell_seurat_transcriptomics.Rmd
@@ -375,7 +375,7 @@ seurat_obj |>
 	NormalizeData(assay="RNA") |> 
 	FindVariableFeatures(nfeatures = 100, assay="RNA") |>
 	SplitObject(split.by = "file") |> 
-	SeuratWrappers::RunFastMNN(assay="RNA", features = 100) |> 
+	RunFastMNN(assay="RNA", features = 100) |> 
 	RunUMAP(reduction = "mnn", dims = 1:20) |> 
 	FindNeighbors(dims = 1:20, reduction = "mnn") |> 
 	FindClusters(resolution = 0.3)