Skip to content

Issues: thomasvangurp/epiGBS

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

19 Open 9 Closed
19 Open 9 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

OverFlowError in mergeBSv3.py
#27 opened Jan 28, 2020 by FleurGaBru
merge_watson_crick.py very slow
#24 opened May 3, 2019 by FleurGaBru
5
demultiplex.py put_output error
#23 opened Dec 7, 2018 by MagnificaScience
Please indicate version number of Bioconductor packages
#22 opened Oct 5, 2018 by FleurGaBru
Why is the sum of snps and methylated positions higher than the position in the merged vcf file?
#21 opened Sep 6, 2018 by FleurGaBru
header of file snp.vcf.gz is confusing
#20 opened Sep 6, 2018 by FleurGaBru
map_STAR.py: tmpdir not forwarded to sambamba
#18 opened Jan 18, 2018 by MWSchmid
rnbeads_analysis.py execution halted
#16 opened Nov 7, 2017 by FleurGaBru
2
conda install version for epiGBS
#15 opened Nov 1, 2017 by thomasvangurp
conda dependencies
#14 opened Nov 1, 2017 by thomasvangurp
put pypy and python2.7 in requirements
#13 opened Nov 1, 2017 by thomasvangurp
Control NT in barcode file
#12 opened Nov 1, 2017 by thomasvangurp
mapping_variant_calling.py, function run_STAR() only works with --input_dir
#11 opened Sep 27, 2017 by MWSchmid
make_reference.py: min_unique_size and clustering_threshold ignored?
#10 opened Sep 27, 2017 by MWSchmid
2
demultiplex script gives error: no space left on the device - and question about cleaning up Illumina reads
#9 opened Aug 29, 2017 by catarinamedeiros
GBS scripts
#8 opened Aug 23, 2017 by NielsWagemaker
map_STAR.py : command not found
#7 opened Jul 12, 2017 by justinjohns
1
Joined reads do not map with STAR
#6 opened Jul 11, 2017 by thomasvangurp
Comma separated vs tab separated files
#5 opened May 11, 2016 by thomasvangurp
4
ProTip! no:milestone will show everything without a milestone.