v.0.4.6 `write_colony` replace `haplo2colony` and `stackr` now likes PCs!

v.0.4.6

• I'm pleased to announce that stackr parallel mode now works with Windows!
  Nothing to install, just need to choose the number of CPU,
  the rest is done automatically.
• haplo2colony is deprecated. Use the new function called write_colony!
• write_colony: works similarly to the deprecated function haplo2colony,
  • with the major advantage that it's no longer restricted to STACKS
    haplotypes file.
  • The function is using the tidy_genomic_data module
    to import files. So you can choose one of the 10 input file formats supported
    by stackr!
  • other benefits also include the possibility to efficiently test MAF,
    snp.ld, haplotypes/snp approach, whitelist of markes,
    blacklist of individuals, blacklist of genotypes, etc. with the buit-it
    arguments.
  • the function only keeps markers in common between populations/groups
    and is removing monomorphic markers.
  • Note: there are several defaults in the function and
    it's a complicated file format, so make sure to read the function
    documentation, please, and COLONY manual.